SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18938

Length: 1952 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene18938
CGTCGTGACCTTGGCTGTCACTCAATTTTATTCTCCGACACCATTCTGCGGGAAAACGCATGTAGATGGTGGAGGAAGAGGAAGAAGTGGAGGTGGATCAGTTTTGAAGATACCAGAAAAATAATATTGTACTCTTACTACAAGATCTTGTAAGGGCTTGTCAAGTGGCAACAATGTCGCGAAAAGGGTTGATGGAGCAGGACCTGACTAAGCTGGATGTTACCAAGTTGCATCCACTTTCTCCAGAGGTTATTTCTCGTCAAGCTACAATAAACATTGGTACAATTGGACACGTGGCACATGGTAAATCAACAGTGGTTAAAGCAATATCTGGGGTCCAGACAGTTCGTTTCAAGAATGAACTGGAGCGTAACATCACTATTAAACTGGGATATGCCAATGCAAAAATATATAAATGTGAAGATGAGCGCTGTCCTCGGCCAATGTGTTACAAGGCATATGGAAGTGGCAAGGAAGACAGTCCTGTGTGTGATGTTCCTGGTTTTGAGCACACTCGCATGAAGCTTTTAAGACATGTGTCATTTGTTGATTGTCCGGGTCATGATATTCTCATGGCTACTATGCTCAATGGTGCGGCTATCATGGATGGGGCGCTGCTTTTGATTGCTGGCAATGAGAGCTGTCCTCAACCTCAAACTTCAGAGCATCTGGCTGCTGTGGAAATCATGCGTCTTAAACATATAATTATTTTGCAAAACAAAATTGATCTTATCCAGGAGAGTGTAGCTATCAACCAGCATGAGGCAATTCAGAAGTTTATTCAGGGTACTATCGCTGATGGAGCACCTGTAGTACCAATATCTGCACAACTGAAATACAATATCGATGTTGTCTGCGAATACATAACAAACAAGATTCCCATTCCAGAGCGTAATTTTGTTGATCCACCCAATATGATCGTTATCAGATCTTTTGATGTAAATAAGCCTGGTGCTGAAGTTGATGACATAAAAGGAGGTGTTGCAGGTGGAAGTATACTGAAGGGTGTTTTGAAGGTGAATCAAAAAATTGAAGTTCGTCCAGGCATTGTTGTCAAGGACGAGGGTGGCAACATCAAGTGTACGCCCATCTTTTCAAGAATAATTTCACTTTATGCTGAGCAGAATGAGTTGCAGTTTGCTGTTCCTGGCGGCCTTATTGGTGTGGGTACCACAATAGATCCCATGCTGACACGTGCTGACAGGCTTGTGGGGCAAGTCCTTGGAGAAGTTGGCGAGCTACCAGATGTGTTTGTTGAACTTGAGGTTAATTTTTTCCTACTTCGTCGCCTCCTGGGTGTTAGGACAAAGGGTACAGAAAAACAGGGAAAAGTTTCAAAACTGGCTAAGGGAGAAGTTCTGATGCTTAATATTGGTTCAATGTCCACTGGAGCTCGGGTGCTTGCTGTGAAGAATGACCTGGCCAAGCTCCAACTTACTTCTCCAGTGTGCACAAGTAAAGGTGAAAAGATGGCACTTAGCAGGCGAGTAGAAAAGCATTGGCGATTGATAGGATGGGGTCAAATTCAAGCTGGAGCAATGCTGGACATACCCCCGGCATCTGAATAAGATAGTGCACACACAAAACCCAATTATACTTGAGAAAATAAAAAGGGTACTTGAGAAAAGGGACAATGTGGATAGGGAGAGAGTTATTAGGAACAATTTTTGTTAGGTCGAGAAGAAAACCTTTCAAGGTATTGTGTTCTAAAGGGAACAGCTAGCTCATATATTTATTCTGATCTTGATTTTTTTATTCAGTATTTAGCATTTGTTTTAGAATGAGCTCAGTTACAGAACCCGTATTTCCAGGTTACTGAATTTCACTACAGCTATTGCTTATGTTGTAATAGAGTCCAGACCCATTGAAGAATGACCATTGTTTTCAAATTCAGTTGTAATTATGATTTTTGTTAAATACAAGTTTATTAATTGATTGTCCATTAGGTTCTC

Ace file of the UniGene sp_v1.1_unigene18938

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	EIF2 GAMMA; translation factor, nucleic acid binding / translation initiation factor; K03242 translation initiation factor eIF-2 gamma subunit	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	strong similarity to initiation factor eif- gb	-	-	95%

Source	ECs	Term	Type	Identity
Blast2go	Heterotrimeric G-protein GTPase.	EC:3.6.5.1	-	95%
Blast2go	Small monomeric GTPase.	EC:3.6.5.2	-	95%
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	95%
Blast2go	Signal-recognition-particle GTPase.	EC:3.6.5.4	-	95%

Source	GOs	Term	Type	Identity
Blast2go	GTPase activity	GO:0003924	Molecular Function	95%
Blast2go	protein binding	GO:0005515	Molecular Function	95%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	95%
Blast2go	GTP binding	GO:0005525	Molecular Function	95%

Source	InterPros	Term	Type	Identity
Blast2go	Protein synthesis factor, GTP-binding	IPR000795	-	95%
Blast2go	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	95%
Blast2go	Translation elongation/initiation factor/Ribosomal, beta-barrel	IPR009000	-	95%
Blast2go	Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal	IPR009001	-	95%
Blast2go	Translation initiation factor 2, gamma subunit, C-terminal	IPR015256	-	95%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL29

Fln msg:

Fln protein: MSRKGLMEQDLTKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCPRPMCYKAYGSGKEDSPVCDVPGFEHTRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAGNESCPQPQTSEHLAAVEIMRLKHIIILQNKIDLIQESVAINQHEAIQKFIQGTIADGAPVVPISAQLKYNIDVVCEYITNKIPIPERNFVDPPNMIVIRSFDVNKPGAEVDDIKGGVAGGSILKGVLKVNQKIEVRPGIVVKDEGGNIKCTPIFSRIISLYAEQNELQFAVPGGLIGVGTTIDPMLTRADRLVGQVLGEVGELPDVFVELEVNFFLLRRLLGVRTKGTEKQGKVSKLAKGEVLMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSKGEKMALSRRVEKHWRLIGWGQIQAGAMLDIPPASE*

Protein Length: 466

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTATTCTCCGACACCATTCTGCGGGAAAACGCATGTAGATGGTGGAGGAAGAGGAAGAAGTGGAGGTGGATCAGTTTTGAAGATACCAGAAAAATAATATTGTACTCTTACTACAAGATCTTGTAAGGGCTTGTCAAGTGGCAACA_-_ATGTCGCGAAAAGGGTTGATGGAGCAGGACCTGACTAAGCTGGATGTTACCAAGTTGCATCCACTTTCTCCAGAGGTTATTTCTCGTCAAGCTACAATAAACATTGGTACAATTGGACACGTGGCACATGGTAAATCAACAGTGGTTAAAGCAATATCTGGGGTCCAGACAGTTCGTTTCAAGAATGAACTGGAGCGTAACATCACTATTAAACTGGGATATGCCAATGCAAAAATATATAAATGTGAAGATGAGCGCTGTCCTCGGCCAATGTGTTACAAGGCATATGGAAGTGGCAAGGAAGACAGTCCTGTGTGTGATGTTCCTGGTTTTGAGCACACTCGCATGAAGCTTTTAAGACATGTGTCATTTGTTGATTGTCCGGGTCATGATATTCTCATGGCTACTATGCTCAATGGTGCGGCTATCATGGATGGGGCGCTGCTTTTGATTGCTGGCAATGAGAGCTGTCCTCAACCTCAAACTTCAGAGCATCTGGCTGCTGTGGAAATCATGCGTCTTAAACATATAATTATTTTGCAAAACAAAATTGATCTTATCCAGGAGAGTGTAGCTATCAACCAGCATGAGGCAATTCAGAAGTTTATTCAGGGTACTATCGCTGATGGAGCACCTGTAGTACCAATATCTGCACAACTGAAATACAATATCGATGTTGTCTGCGAATACATAACAAACAAGATTCCCATTCCAGAGCGTAATTTTGTTGATCCACCCAATATGATCGTTATCAGATCTTTTGATGTAAATAAGCCTGGTGCTGAAGTTGATGACATAAAAGGAGGTGTTGCAGGTGGAAGTATACTGAAGGGTGTTTTGAAGGTGAATCAAAAAATTGAAGTTCGTCCAGGCATTGTTGTCAAGGACGAGGGTGGCAACATCAAGTGTACGCCCATCTTTTCAAGAATAATTTCACTTTATGCTGAGCAGAATGAGTTGCAGTTTGCTGTTCCTGGCGGCCTTATTGGTGTGGGTACCACAATAGATCCCATGCTGACACGTGCTGACAGGCTTGTGGGGCAAGTCCTTGGAGAAGTTGGCGAGCTACCAGATGTGTTTGTTGAACTTGAGGTTAATTTTTTCCTACTTCGTCGCCTCCTGGGTGTTAGGACAAAGGGTACAGAAAAACAGGGAAAAGTTTCAAAACTGGCTAAGGGAGAAGTTCTGATGCTTAATATTGGTTCAATGTCCACTGGAGCTCGGGTGCTTGCTGTGAAGAATGACCTGGCCAAGCTCCAACTTACTTCTCCAGTGTGCACAAGTAAAGGTGAAAAGATGGCACTTAGCAGGCGAGTAGAAAAGCATTGGCGATTGATAGGATGGGGTCAAATTCAAGCTGGAGCAATGCTGGACATACCCCCGGCATCTGAATAA___GATAGTGCACACACAAAACCCAATTATACTTGAGAAAATAAAAAGGGTACTTGAGAAAAGGGACAATGTGGATAGGGAGAGAGTTATTAGGAACAATTTTTGTTAGGTCGAGAAGAAAACCTTTCAAGGTATTGTGTTCTAAAGGGAACAGCTAGCTCATATATTTATTCTGATCTTGATTTTTTTATTCAGTATTTAGCATTTGTTTTAGAATGAGCTCAGTTACAGAACCCGTATTTCCAGGTTACTGAATTTCACTACAGCTATTGCTTATGTTGTAATAGAGTCCAGACCCATTGAAGAATGACCATTGTTTTCAAATTCAGTTGTAATTATGATTTTTGTTAAATACAAGTTTATTAATTGATTGTCCATTAGGTTCTC

Fln Alignment:

sp_v1.1_unigene18938___MSRKGLMEQDLTKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCPRPMCYKAYGSGKEDSPVCDVPGFEHTRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAGNESCPQPQTSEHLAAVEIMRLKHIIILQNKIDLIQESVAINQHEAIQKFIQGTIADGAPVVPISAQLKYNIDVVCEYITNKIPIPERNFVDPPNMIVIRSFDVNKPGAEVDDIKGGVAGGSILKGVLKVNQKIEVRPGIVVKDEGGNIKCTPIFSRIISLYAEQNELQFAVPGGLIGVGTTIDPMLTRADRLVGQVLGEVGELPDVFVELEVNFFLLRRLLGVRTKGTEKQGKVSKLAKGEVLMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSKGEKMALSRRVEKHWRLIGWGQIQAGAMLDIPPASE
B8LL29_______________MSRKGLMEQDLSKLDVTKLNPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDEHCPRPMCYKAYGSGKEDSPLCEVSGFENTRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAGNESCPQPQTSEHLAAVEIMRLKHIIILQNKIDLIQESVAINQHEAIQKFIQGTIADGAPVVPISAQLKYNIDVVCEYITNKIPIPERNFVDPPNMIVIRSFDVNKPGAEVDEIKGGVAGGSILKGVLKVNQKIEVRPGIVVKDESGNIKCTPIFSRIISLYAEQNELQFAVPGGLIGVGTTIDPTLTRADRLVGQVLGEIGELPDVFVELEVNFFLLRRLLGVRTKGTEKQGKVSKLAKGEVLMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSKGEKMALSRRVEKHWRLIGWGQIQAGAMLDIPPASE

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
286	42			57	1.0
394	83			16	0.994512
397			16	83	0.994512
399	20	80			0.995493
403	20			80	0.995493
405		80	20		0.995493
406	75		25		0.996473
407	75			25	0.996473
409	75	25			0.996473
411			25	75	0.996473
413	25			75	0.996473
415	25			75	0.996473
417	75	25			0.996473
1889	85			14	0.993533
1905	60		40		1.0
1941	25			75	0.996473
1943	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain