SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18927

Length: 1257 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18927

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Late embryogenesis abundant protein n=2 Tax=Pinaceae RepID=Q40869_PICGL	-	-	2.0e-09	32%
FL-Next	tr=Late embryogenesis abundant protein; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	32%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q40869

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 46 aas, putative chimeric sequence, your sequence is shorter than subject: 133 - 190

Fln protein: MQIMTMLFARLRRFGMSKSSRFCIHEGVLRAAGSQSNDLAYFTTVTRVGEYVSNTAEKTRESTKEAVQTAKQKAEDFVHETKETVKSTAQQIEHKTQEIGEKARSTAEEFSRQAKERTDQAADTDSIHGRRG*

Protein Length: 134

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTATTTATCACTACGTCGTGACCTTGGCTGTCACTCTGCTAGGGTGTTTTACACGAGTGGAGTTTTTGATAATCAGATTAGTTGAGGCATCCGCATTTTGTTGCAGGAGTCTGAAATATTA_-_ATGCAGATCATGACAATGTTGTTTGCAAGATTGAGGCGCTTTGGCATGTCCAAATCATCCAGATTTTGTATACATGAGGGTGTTCTGAGAGCAGCAGGAAGCCAAAGCAATGATCTGGCTTACTTCACCACTGTAACTAGAGTTGGAGAGTATGTATCAAACACAGCTGAAAAGACAAGAGAGTCCACCAAGGAAGCTGTTCAGACTGCCAAACAAAAGGCAGAAGATTTTGTCCATGAAACCAAGGAGACTGTGAAGTCCACAGCCCAACAAATTGAGCATAAAACTCAAGAAATTGGCGAGAAAGCCAGGTCTACAGCTGAAGAGTTCAGCAGACAGGCCAAAGAGCGCACTGACCAGGCAGCTGACACAGACTCGATCCATGGGAGAAGAGGCTAA___ACAAAATGTGCAAGATGCCAAGGAAGACTCCAATAAGTAGACATAACAGCTGCTAATTGATTTTTATAGAACGATATGATCATGCCATAGGGTCCAATGAAAATCTGAATAAATGTTGTGGTTCACTTATTATTGGGCAAAATGTTTACCTAGTAACTAGGTTAAAATGATACTTAATGTCTGGTTGGGCTGGCTCACTGTTTGAGTTTATTTGTTTAATAAATGTGAAAAGGTAATTTGACTCTAGTGAGGGATACAAGAATCTGCATAGTAGGAGCTCTCTGGAGTGTGAAATTGGGAGTTTGTCTGATTGAGGTTTAGTATTGAATCATGTGAATGATTTCATGTAAGATGTGGACTGGTTTGGCCCTGCCTTTGAAGGTATTGTTGTACAAATTTTAATTATTCAGTTTCTTTGACTAATCAAATTGGAAAAGTTATCTGATTCTGGTGAGTGATAGGACAATCTGCACAAGGATCTTCTGAAGATTCACTGGAGAAGCTCTGAAATTGGGAATTTGTCTTATTGATGTTTAATATTGAGGCACGTGAATGAATTTTATGTAAGATGTGGACTGTTTTGGCCCTACCTTTGTAGGTACTATTGGACAAATTTTTCATTATTCAGCATTCATAAACTGTGCTCCATGGAGTATGGAATTGGGAATTTGTCTGGTTGTTGTTTGTTGTTTAATATTGGGCTATGAGAATGA

Fln Alignment:

sp_v1.1_unigene18927___MTMLFARLRRFGMSKSSRFCIHEGVLRAAGSQSNDLAYFTTVTRVGEYVSNTAEKTRES------------------TKEAVQTAKQKAEDFVHETKETVKSTAQQIEHKTQEIGEKARSTAEEFSRQAKERTDQAAD
Q40869_______________MAALSAKMPLLSISKGST---HHGVTAMRSATAAPRVFFRTIPRAGEYGRNAAEEARETADSTAEKSKRMAEEAKERAKGATYEAKEKAKGTTYEAKEKTKSAAEEAGNKAGEMKENAREKAEGLGQRAKETTSQATE

SNPs (tot: 65)

Position	A %	C %	G %	T %	Probability
47	33	66			1.0
51		33	66		1.0
61	14		14		0.984337
62	14			85	0.993533
63		14	71		0.984337
64	14	85			0.993533
66	85			14	0.993533
69		14	85		0.993533
73		12		87	0.992554
74	12			87	0.992554
75		12		87	0.992554
76	87			12	0.992554
79		87	12		0.992554
88	7			78	0.999974
496		66		33	0.997452
498		33		66	1.0
499	66	33			0.997452
500		33	33	33	0.997753
501		33		66	0.997452
507	33			66	1.0
511	33			66	1.0
515		33	66		1.0
517		66	33		0.997452
518	33			66	0.997452
519	33	33			0.997753
583	66	33			1.0
584		22	77		0.999999
586	66	11		22	0.999999
588	66		22	11	0.999999
589		88	11		0.923564
590	77		11		0.968132
591		11		88	0.923564
592	66	22	11		0.999999
593	77			22	0.999999
594		88		11	0.923564
595	77		11	11	0.968132
596		11	77		0.968132
597	11	88			0.923564
599		11	88		0.923564
600	11	77		11	0.968132
601		11		88	0.923564
603	44	44		11	1.0
605		11		88	0.923564
606	11		88		0.923564
699	88	11			0.923564
702	88	11			0.923564
703	88		11		0.923564
704		88		11	0.923564
705			11	88	0.923564
707		11	88		0.923564
708		11	88		0.923564
712	88		11		0.923564
713	88		11		0.923564
714	88	11			0.923564
717	88			11	0.923564
718		11		88	0.923564
723	87	12			0.992554
726			87	12	0.992554
961		87	12		0.992554
962	12			87	0.992554
963		12		87	0.992554
965	12		87		0.992554
967	12	87			0.992554
971	12			87	0.992554
984		42	57		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain