SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18922

Length: 1708 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18922

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SEC22A2-2, SEC22A2-1; R-SNARE, SEC22-family; K08517 vesicle transport protein SEC22	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	r- sec22-family	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	91%
Blast2go	transporter activity	GO:0005215	Molecular Function	91%
Blast2go	integral to membrane	GO:0016021	Cellular Component	91%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	91%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Blast2go	Synaptobrevin	IPR001388	-	91%
Blast2go	Longin	IPR010908	-	91%
Blast2go	Longin-like	IPR011012	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ24

Fln msg:

Fln protein: MVKLTMIARVTDGLPLAEGLDDGREQRDLEFYKQQAKSLFKKLSHGQHEPSRMSIETGPYIFHYIIEARVCYLTMCDRSYPKKLAFQYLEELKNEFEKLYQSQVETVARPYAFIKFDTFIQKTRKLYLDTRTQRNLAKLNDDLYEVQQIMTRNVQEVLGVGEKLDQVSQMSSRLSSESRKYADKAKDLSRQAFIKKWAPVAIVLGVVIVLLWMRSYIWQ*

Protein Length: 221

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTATTTTAAGTGAAGTCAGACAGTGGTTTGAGCTTGGGTGCGCGATACACAGATCCACGTCTGCATTGAATGCAAGCAAAAATCAAGGGTGGTAACCTCGTGTGATCCGCGGGGAGAACCGCCAGACCACCCTCCCAAATTTTGGTCCCAGTTGTCGCTTTGATTTGATTCGATCCAGCAGTTTTCGCTCTTCAATTCAACCTTCTTCGCTGTCGGAAAGGTTCAATTTGGACCAACATCGGACCAAACTGAGAAGCGCAAGGGGACAGCCAACTGAATTCAAGCTCACGAGACCGTATTTGCCCTGTTGAAGTCTTGGGTTCTTTTACAAGCTTCTTCAGCAACAATAATAATTGACTGCAGAG_-_ATGGTCAAACTGACGATGATTGCTCGTGTTACTGATGGTCTTCCTTTAGCGGAAGGCTTGGATGATGGGCGGGAACAAAGAGACCTGGAATTTTATAAACAGCAGGCCAAGTCATTGTTCAAAAAATTGTCACACGGTCAACATGAACCTTCAAGGATGTCCATTGAAACTGGCCCATATATATTTCACTATATAATTGAAGCTCGTGTTTGTTACTTAACTATGTGTGATCGCTCTTATCCAAAGAAGCTTGCATTTCAGTACCTTGAGGAGCTCAAAAATGAGTTTGAAAAGTTGTATCAGTCTCAAGTAGAAACTGTTGCAAGACCATATGCTTTTATTAAATTTGATACATTTATTCAGAAGACAAGGAAACTGTACTTGGACACACGAACACAGCGGAACCTTGCTAAACTAAATGATGATCTATATGAAGTTCAGCAGATAATGACACGAAATGTTCAAGAAGTGTTGGGAGTTGGGGAGAAGCTTGATCAAGTCAGTCAGATGTCTAGTCGTCTGTCATCAGAATCTCGGAAATATGCTGATAAAGCAAAAGATTTAAGCAGACAGGCATTTATCAAGAAGTGGGCACCTGTGGCCATTGTTCTGGGAGTTGTTATTGTGCTCCTGTGGATGCGGAGTTATATTTGGCAGTGA___TTTTCTTTCAGTCATTATTACATTACCTGGGTAAGAGTGGAGTTTAGCTGCTCAGAGGCAGATAGTAACAAGCAGGTAATATTTTTGAGGGAGGGAATTCGGGGTAGCATTTTGTTTTGGCTTGGTTGCTTTTTATTGAATGCAAATTCGAAATGAGGAAAGAGAGATCTTACTGAGGGCAATGACCAGTTGTATGCCGAGCTTGATTGGTACAGGTGAACGTGAAACAAGTTTCACTATTTGATGGATGAGATGAGTAAGATTTTATTTCAGTTGTTAGAATTACAATCTTAGAGGAAGATAATAATATTGTTCTGGTCAGATAGCTTATTCATCAGGGAGATGAAATTTTAAATATTTACCTTAGGGTTTCTCTGTGATCAGTTGTCATTGGGGCCATTATTTCTTTTTACAGTTATTGTAATTATTTGTTGGTACTTGTCTAGTTATAAAACATTATTTGAATATTTCAATGAAATGCACAAATAACTCAATGAGGCTTTTCATAATTATTACTTGTGTTACCGTGTTAGTGTTTTATGTCAATATTAAGCATTTTGCCTTTATGTTTCACAGTCAAGTCCTGCTATTGGGATTCAAAATATTGATGTAATAACTTTATGGCTAAGAAAGGTCCTAAAATTATTGAATAGGTTT

Fln Alignment:

sp_v1.1_unigene18922___MVKLTMIARVTDGLPLAEGLDDGREQRDLEFYKQQAKSLFKKLSHGQHEPSRMSIETGPYIFHYIIEARVCYLTMCDRSYPKKLAFQYLEELKNEFEKLYQSQVETVARPYAFIKFDTFIQKTRKLYLDTRTQRNLAKLNDDLYEVQQIMTRNVQEVLGVGEKLDQVXXXXXXXXXXXRKYADKAKDLSRQAFIKKWAPXXXXXXXXXXXXWMRSYIW
A9NQ24_______________MVKLTMIARVTDGLPLAEGLDDGREQKDLEFYKQQAKSLFKKLSQGQHEPSRMSYETGPFVFHYIIEARVCYLTMCDRSYPKKLAFQYLEELKNEFEKLYQSQVETVARPYAFIKFDTFIQKTRKLYLDTRTQRNLAKLNDDLYEVQQIMTRNVQEVLGVGEKLDQVSQMSSRLSSESRKYADKAKDLSRQAFIKKWAPVAIVLGVVFVLLWMRRYIW

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
64		20	80		0.995493
70		80		20	0.995493
74	80			20	0.995493
75		80	20		0.995493
76	80		20		0.995493
78	80			20	0.995493
84	80			20	0.995493
1162	90	9			0.999872
1164		90	9		0.999872
1166		9		90	0.999872
1167		9		90	0.999872
1175		9	90		0.999872

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain