SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18915

Length: 1027 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18915

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF868 domain containing protein	-	-	4.0e-14	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	predicted protein [Physcomitrella patens subsp. patens]	-	-	2.15845e-12	89%

Full-Lengther Next Prediction

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
121			60	40	1.0
127	60		40		1.0
128		60	40		1.0
129	40	60			1.0
131			40	60	1.0
132			60	40	1.0
136	40		60		1.0
137		40		60	1.0
138	40	60			1.0
140		60		40	1.0
143		50	50		1.0
144	50	50			1.0
243		85		14	0.993533
245		85	14		0.993533
248	14	85			0.993533
250	85	14			0.993533
251	85			14	0.993533
252		85		14	0.993533
253		85	14		0.993533
258		83		16	0.994512
269		50		50	1.0
293	90	10			0.90298
294			10	90	0.90298
298	90		10		0.90298
300	81		18		0.999994
305	81			18	0.999994
316	90			10	0.90298
405		12	87		0.992554
410	12	87			0.992554
423	12			87	0.992554
425	87			12	0.992554
426		12		87	0.992554
427	12			87	0.992554
455	87		12		0.992554
457			12	87	0.992554
486	90	10			0.90298
489	90	10			0.90298
490		90	10		0.90298
492	90		10		0.90298
493	10		90		0.90298
494		10		90	0.90298
495	90	10			0.90298
496			90	10	0.90298
501	81		18		0.999994
512			6	93	0.999264
570		21		78	1.0
583	7			92	0.999664
584	92			7	0.999664
712		87		12	0.992554
773	75		25		0.996473
908	55	44			1.0
930	12		87		0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
335	354	TCCTCT TCCTCT TCCTCT TC	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain