SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18911

Length: 3431 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene18911
CGTCGTGACCTTGGCTGTCACTCAATGTATGAAATGATTGGTCAGCCCCAACCGAAATCGTACGAAAACCTATGACGCAATCGATTCTAAGATCTACTCCCCTCGGGGACAAAATTGCAGGGTAGTTCTTAGAAGAACTCTGAAACTTGGTTTCTTTGCATTTTCAATCGACCGAAGGCCCTGGCCGACTCAAACCCCAGATCAGGTTTTGCTGAAGCCCTAGAAACTTTCGCTGTCAAACAAAATGGAGAAATCCTGTAGCCTGCTGATCCACTTCGACAAGGGGAATCCGGCCATGGTGAACGAGATTAAAGAATCCCTGGAAGGAAATGACGTCACGCTCAAGATCGAGGCAATGAAGAAGGCCGTAATGCTCCTCTTGAATGGAGAGACTCTCCCGCAACTCTTCATCACCATAGTGAGGTATGTACTCCCCTCAGAAGACCACACCATACAGAAATTGCTCCTCTTATATTTGGAAATCATTGACAAAACCGACTCCAAGGGCAAGGTCCTGCCGGAGATGATCCTCATTTGTCAAAACCTCCGAAATAACCTCCAGCACCCTAATGAGTACATCAGGGGTGTAACCCTTAGGTTTCTGTCTAGATTAAATGAGAGCGAGCTGATTGAGCCCCTGATACCCTCTGTTCTGGCTAATTTAGAGCACCGCCATCCCTACATTAGGCGGAATGCTATTCTGGCGATGATGTCCATATACAAGCTGCCGCAGGGAGAGCAGCTGCTGGTCGATGCACCAGAGATGATAGAAAAGGCCCTGGGGACAGAACAAGATCTGTCTGCCAAGCGAAATAGCGTTCTTGATGTTGTTCAATTGCTCTCAGGAGCGTGCGATCGGTTACCTTCTTCGTAACCTTGAGGCTGTGCCGAACTGGGGAGATTTGCTCCAGATGGTTGTTCTGGAGCTGATCCGGAAAGTCTGCCGATCCAATCCGGCGGAGAAGGGGAAATACATCAAGATCATCATTTCGTTGCTGAATTCGTCATCGACTGCGGTCATGTATGAGTGTGCCGCAACTTTGGTGAGTCTATCTTCAGCGCCAACTGCTATCCGGGCTGCGGCGAACACCTACTGTCAGCTCTTGCAATCGCAGAGCGACAACAATGTGAAGCTCATTGTGCTGGATCGCTTGCAAGAGCTGAAGGCATCGCACAGGGAAGTTATGGTGGATATGATCATGGATGTCCTCCGGGCGCTGTCGAGTCCGAATCTGGATGTACAGAGGAAGACGCTCGATATAGCGCTGGAATTGATCACCCCTAAGAATATCGACGAGGTTGTCATGACGCTGAAGAAGGAGGTCGTAAAGACCCAGAGCAGTGAGTTGGAGAAGAATGGAGAGTACAGGCAAATGCTGGTGCAGGCAATCCACTCGTGTGCTGTTAAGTTCCCTGAAGTTGCGAGTACTGTTGTTCATCTGCTGATGGAATTCTTAGGGGATAGCAATCTTGCATCTGCAATGGATGTCGTCCTTTTTGTGCGAGAGATTATTGAAACTAATCCTAAGCTCAGAATGTCCATAATTGCAAGACTTTTGGACTCTTTCTATCAGATCCGATATTCTCGTGTCTGTTCATGTGCCCTTTGGATCATTGGAGAGTACTGCCTTTCCCTGTCCGAAGTGGAAAACGGTATCTCGACCATTAATCAATGCCTTGGCGAACTGCCATTTTATACAGTGGCTGAGGATGCCGAGGCTGGTGAGTCAAAGTCTGTGGCAACTACCAAATCTCAACCGGTAAATGCCATAACTGTCTCTTCGAGGCGACCTGCTATTCTTGCTGATGGGACTTATGCTACACAGAGTGCTGCTTCAGAAATTGCTGTTGCAACGGCTGCTTTAATTCCAGGATCTGTTGCCACTACCGGAAATCTGAGATCAATTCTTTTAACAGGAGATTTCTTTCTTGGTGCTGTGATTGCATGTACTTTGACTAAGTTAATTTTTCGTTTGGAAGAGGTACAACCTTCTAGAGTGGCAGTGAACAAGGCAGCTGCTGAAGCACTGTTAATAATGGTCTCCATGCTTCGACTTGGTCAATCTTCTGTGCTTCCACATCCGATTGACGATGATTCCTATGATCGGATTAGTCTCTGCATACAGATTCTTACACGTCCTGATGATTTCTTCAAGAAAGTATGGTTGCAGTCTTGTCGGGAGAGCTTTATGAAGATGCTTGCCGACAAGCAGTTCCGAGAGACAGAAGAAAGCAAAGCCAAAGCTCAAGTCTCACATGCACAACCTGATGACTTGATTGATTTCCGCCTCTTAAAGAGCAGAAAGGGTATGAGTCAGCTGGAATTAGAAGATGAAGTGGAAGATGATTTGAAGCGTGCTACTGGAGAATTTATAAAGGATGGCGACAGTTTGAATAAATTGAATCGAGTTCTACAACTGACGGGCTTCAGTGATCCAGTTTATGCAGAAGCATATGTTACAGTTCATCAATATGATATTGTCCTTGATGTTACTGTGATAAACCGCACAAAGGAGACACTGCAGAATCTTTGCTTGGAATTAGCTACCATGGGTGATCTTAAACTGGTAGAACGACCACAAAATTATACTCTAGCACCTGAATCAAACAAGCAGATAAAAGCTAATATAAAGGTTTCTTCAACAGAAACTGGTGTGATATTTGGTAACATTGTTTACGAGACTACTAGTGTGTTGGATCGCAATGTAGTTGTTCTGAATGATATACACATAGATATCATGGACTACATCTCTCCAGCCACTTGTCCTGATGTTACTTTTAGGAACATGTGGGCTGAGTTTGAATGGGAGAACAAGGTGGCTGTTAATACAACAATTCAGGACGAAAAGGAGTTCCTAAACCATATTGTGAACTCAACAAACATGAAGTGCCTCACACCCCTGTCCGCACTGGATGGAGATTGTGGATTTCTAGCTGCAAATCTGTATGCCAAGAGTGTCTTTGGTGAAGATGCACTGGTAAATGTCAGTGTTGAGAAACAACCTGATGGTAAGCTGAGTGGTTATATTAGGATAAGAAGCAAAACCCAAGGCATTGCTTTGAGTTTGGGTGATAAAATTACACTCAAACAAAAGGGTTAAGTCCATCTGGAATATATGATGTCCTGTGTATGCTGCCAGGATGACAGAACTTTGATTGTTTGGACATTTCCTGCATGTTAGTAGGACTATGCCTATTCTCGTCTCTTAAGCTGATGATGATTTTTGGGAGTTGTCAGTTAGGACTATGGTTATTCTTGTATTTGTAAGTAGTTTACAGATCTTGTTATTGTGTTATTATTTAAAAAGTAGAGTTGCTCTCTCATTGTGAGTGGGTTAAGCAGTGTTGAGGCCCGCTGGTTGCCTTTAATATTTCTTGTAACTACGAGGTACTCGAAGGAAATTGTGCATGGTTGGAATGATAAGTATTAA

Ace file of the UniGene sp_v1.1_unigene18911

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative	-	-	74%
FL-Next	sp=Coatomer subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	88%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	88%
Blast2go	clathrin binding	GO:0030276	Molecular Function	88%
Blast2go	structural molecule activity	GO:0005198	Molecular Function	88%
Blast2go	COPI vesicle coat	GO:0030126	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Blast2go	Clathrin/coatomer adaptor, adaptin-like, N-terminal	IPR002553	-	88%
Blast2go	Coatomer, beta subunit, C-terminal	IPR011710	-	88%
Blast2go	Armadillo-like helical	IPR011989	-	88%
Blast2go	Armadillo-type fold	IPR016024	-	88%
Blast2go	Coatomer beta subunit	IPR016460	-	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PR52

Fln msg: Overlapping hits, possible frame ERROR between 823 and 816,

Fln protein: MEKSCSLLIHFDKGNPAMVNEIKESLEGNDVTLKIEAMKKAVMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDSKGKVLPEMILICQNLRNNLQHPNEYIRGVTLRFLSRLNESELIEPLIPSVLANLEHRHPYIRRNAILAMMSIYKLPQGEQLLVDAPEMIEKALGTEQDLSAKRNxxxxMLFNCSQERAIGYLLRNLEAVPNWGDLLQMVVLELIRKVCRSNPAEKGKYIKIIISLLNSSSTAVMYECAATLVSLSSAPTAIRAAANTYCQLLQSQSDNNVKLIVLDRLQELKASHREVMVDMIMDVLRALSSPNLDVQRKTLDIALELITPKNIDEVVMTLKKEVVKTQSSELEKNGEYRQMLVQAIHSCAVKFPEVASTVVHLLMEFLGDSNLASAMDVVLFVREIIETNPKLRMSIIARLLDSFYQIRYSRVCSCALWIIGEYCLSLSEVENGISTINQCLGELPFYTVAEDAEAGESKSVATTKSQPVNAITVSSRRPAILADGTYATQSAASEIAVATAALIPGSVATTGNLRSILLTGDFFLGAVIACTLTKLIFRLEEVQPSRVAVNKAAAEALLIMVSMLRLGQSSVLPHPIDDDSYDRISLCIQILTRPDDFFKKVWLQSCRESFMKMLADKQFRETEESKAKAQVSHAQPDDLIDFRLLKSRKGMSQLELEDEVEDDLKRATGEFIKDGDSLNKLNRVLQLTGFSDPVYAEAYVTVHQYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESNKQIKANIKVSSTETGVIFGNIVYETTSVLDRNVVVLNDIHIDIMDYISPATCPDVTFRNMWAEFEWENKVAVNTTIQDEKEFLNHIVNSTNMKCLTPLSALDGDCGFLAANLYAKSVFGEDALVNVSVEKQPDGKLSGYIRIRSKTQGIALSLGDKITLKQKG*

Protein Length: 954

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTATGAAATGATTGGTCAGCCCCAACCGAAATCGTACGAAAACCTATGACGCAATCGATTCTAAGATCTACTCCCCTCGGGGACAAAATTGCAGGGTAGTTCTTAGAAGAACTCTGAAACTTGGTTTCTTTGCATTTTCAATCGACCGAAGGCCCTGGCCGACTCAAACCCCAGATCAGGTTTTGCTGAAGCCCTAGAAACTTTCGCTGTCAAACAAA_-_ATGGAGAAATCCTGTAGCCTGCTGATCCACTTCGACAAGGGGAATCCGGCCATGGTGAACGAGATTAAAGAATCCCTGGAAGGAAATGACGTCACGCTCAAGATCGAGGCAATGAAGAAGGCCGTAATGCTCCTCTTGAATGGAGAGACTCTCCCGCAACTCTTCATCACCATAGTGAGGTATGTACTCCCCTCAGAAGACCACACCATACAGAAATTGCTCCTCTTATATTTGGAAATCATTGACAAAACCGACTCCAAGGGCAAGGTCCTGCCGGAGATGATCCTCATTTGTCAAAACCTCCGAAATAACCTCCAGCACCCTAATGAGTACATCAGGGGTGTAACCCTTAGGTTTCTGTCTAGATTAAATGAGAGCGAGCTGATTGAGCCCCTGATACCCTCTGTTCTGGCTAATTTAGAGCACCGCCATCCCTACATTAGGCGGAATGCTATTCTGGCGATGATGTCCATATACAAGCTGCCGCAGGGAGAGCAGCTGCTGGTCGATGCACCAGAGATGATAGAAAAGGCCCTGGGGACAGAACAAGATCTGTCTGCCAAGCGAAATxxxxxxxxxxxxATGTTGTTCAATTGCTCTCAGGAGCGTGCGATCGGTTACCTTCTTCGTAACCTTGAGGCTGTGCCGAACTGGGGAGATTTGCTCCAGATGGTTGTTCTGGAGCTGATCCGGAAAGTCTGCCGATCCAATCCGGCGGAGAAGGGGAAATACATCAAGATCATCATTTCGTTGCTGAATTCGTCATCGACTGCGGTCATGTATGAGTGTGCCGCAACTTTGGTGAGTCTATCTTCAGCGCCAACTGCTATCCGGGCTGCGGCGAACACCTACTGTCAGCTCTTGCAATCGCAGAGCGACAACAATGTGAAGCTCATTGTGCTGGATCGCTTGCAAGAGCTGAAGGCATCGCACAGGGAAGTTATGGTGGATATGATCATGGATGTCCTCCGGGCGCTGTCGAGTCCGAATCTGGATGTACAGAGGAAGACGCTCGATATAGCGCTGGAATTGATCACCCCTAAGAATATCGACGAGGTTGTCATGACGCTGAAGAAGGAGGTCGTAAAGACCCAGAGCAGTGAGTTGGAGAAGAATGGAGAGTACAGGCAAATGCTGGTGCAGGCAATCCACTCGTGTGCTGTTAAGTTCCCTGAAGTTGCGAGTACTGTTGTTCATCTGCTGATGGAATTCTTAGGGGATAGCAATCTTGCATCTGCAATGGATGTCGTCCTTTTTGTGCGAGAGATTATTGAAACTAATCCTAAGCTCAGAATGTCCATAATTGCAAGACTTTTGGACTCTTTCTATCAGATCCGATATTCTCGTGTCTGTTCATGTGCCCTTTGGATCATTGGAGAGTACTGCCTTTCCCTGTCCGAAGTGGAAAACGGTATCTCGACCATTAATCAATGCCTTGGCGAACTGCCATTTTATACAGTGGCTGAGGATGCCGAGGCTGGTGAGTCAAAGTCTGTGGCAACTACCAAATCTCAACCGGTAAATGCCATAACTGTCTCTTCGAGGCGACCTGCTATTCTTGCTGATGGGACTTATGCTACACAGAGTGCTGCTTCAGAAATTGCTGTTGCAACGGCTGCTTTAATTCCAGGATCTGTTGCCACTACCGGAAATCTGAGATCAATTCTTTTAACAGGAGATTTCTTTCTTGGTGCTGTGATTGCATGTACTTTGACTAAGTTAATTTTTCGTTTGGAAGAGGTACAACCTTCTAGAGTGGCAGTGAACAAGGCAGCTGCTGAAGCACTGTTAATAATGGTCTCCATGCTTCGACTTGGTCAATCTTCTGTGCTTCCACATCCGATTGACGATGATTCCTATGATCGGATTAGTCTCTGCATACAGATTCTTACACGTCCTGATGATTTCTTCAAGAAAGTATGGTTGCAGTCTTGTCGGGAGAGCTTTATGAAGATGCTTGCCGACAAGCAGTTCCGAGAGACAGAAGAAAGCAAAGCCAAAGCTCAAGTCTCACATGCACAACCTGATGACTTGATTGATTTCCGCCTCTTAAAGAGCAGAAAGGGTATGAGTCAGCTGGAATTAGAAGATGAAGTGGAAGATGATTTGAAGCGTGCTACTGGAGAATTTATAAAGGATGGCGACAGTTTGAATAAATTGAATCGAGTTCTACAACTGACGGGCTTCAGTGATCCAGTTTATGCAGAAGCATATGTTACAGTTCATCAATATGATATTGTCCTTGATGTTACTGTGATAAACCGCACAAAGGAGACACTGCAGAATCTTTGCTTGGAATTAGCTACCATGGGTGATCTTAAACTGGTAGAACGACCACAAAATTATACTCTAGCACCTGAATCAAACAAGCAGATAAAAGCTAATATAAAGGTTTCTTCAACAGAAACTGGTGTGATATTTGGTAACATTGTTTACGAGACTACTAGTGTGTTGGATCGCAATGTAGTTGTTCTGAATGATATACACATAGATATCATGGACTACATCTCTCCAGCCACTTGTCCTGATGTTACTTTTAGGAACATGTGGGCTGAGTTTGAATGGGAGAACAAGGTGGCTGTTAATACAACAATTCAGGACGAAAAGGAGTTCCTAAACCATATTGTGAACTCAACAAACATGAAGTGCCTCACACCCCTGTCCGCACTGGATGGAGATTGTGGATTTCTAGCTGCAAATCTGTATGCCAAGAGTGTCTTTGGTGAAGATGCACTGGTAAATGTCAGTGTTGAGAAACAACCTGATGGTAAGCTGAGTGGTTATATTAGGATAAGAAGCAAAACCCAAGGCATTGCTTTGAGTTTGGGTGATAAAATTACACTCAAACAAAAGGGTTAA___GTCCATCTGGAATATATGATGTCCTGTGTATGCTGCCAGGATGACAGAACTTTGATTGTTTGGACATTTCCTGCATGTTAGTAGGACTATGCCTATTCTCGTCTCTTAAGCTGATGATGATTTTTGGGAGTTGTCAGTTAGGACTATGGTTATTCTTGTATTTGTAAGTAGTTTACAGATCTTGTTATTGTGTTATTATTTAAAAAGTAGAGTTGCTCTCTCATTGTGAGTGGGTTAAGCAGTGTTGAGGCCCGCTGGTTGCCTTTAATATTTCTTGTAACTACGAGGTACTCGAAGGAAATTGTGCATGGTTGGAATGATAAGTATTAA

Fln Alignment:

sp_v1.1_unigene18911___MEKSCSLLIHFDKGNPAMVNEIKESLEGNDVTLKIEAMKKAVMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDSKGKVLPEMILICQNLRNNLQHPNEYIRGVTLRFLSRLNESELIEPLIPSVLANLEHRHPYIRRNAILAMMSIYKLPQGEQLLVDAPEMIEKALGTEQDLSAKRNxxxMLFNCSQERAIGYLLRNLEAVPNWGDLLQMVVLELIRKVCRSNPAEKGKYXXXXXXXXXXXXTAVMYECAATLVSLSSAPTAIRAAANTYCQLLQSQSDNNVKLIVLDRLQELKASHREVMVDMIMDVLRALSSPNLDVQRKTLDIALELITPKNIDEVVMTLKKEVVKTQSSELEKNGEYRQMLVQAIHSCAVKFPEVASTVVHLLMEFLGDSNLASAMDVVLFVREIIETNPKLRMSIIARLLDSFYQIRYSRVCSCALWIIGEYCLSLSEVENGISTINQCLGELPFYTVAEDAEAGESKSVATTKSQPVNAITVSSRRPAILADGTYATQSXXXXXXXXXXXLIPGSVATTGNLRSILLTGDFFLGAVIACTLTKLIFRLEEVQPSRVAVNKAAAEALLIMVSMLRLGQSSVLPHPIDDDSYDRISLCIQILTRPDDFFKKVWLQSCRESFMKMLADKQFRETEESKAKAQVSHAQPDDLIDFRLLKSRKGMSQXXXXXXXXXXXKRATGEFIKDGDSLNKLNRVLQLTGFSDPVYAEAYVTVHQYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESNKQIKANIKVSSTETGVIFGNIVYETTSVLDRNVVVLNDIHIDIMDYISPATCPDVTFRNMWAEFEWENKVAVNTTIQDEKEFLNHIVNSTNMKCLTPLSALDGDCGFLAANLYAKSVFGEDALVNVSVEKQPDGKLSGYIRIRSKTQGIALSLGDKITLKQKG
C0PR52_______________MEKSCSLLIHFDKGNPAMANEIKESLEGNDVERKIEALKKAIMLLLNGDSLPQLFITIVRYVLPSEDHTIQKLLLLYLEIVDKTDSKGKVLPEMILICQNLRNNLQHPNEYIRGVTLRFLSRLNESELIEPLVPSVLANLEHRHPYIRRNAILAVMSIYKLPQGEQLLVDAPEMIEKVLATEQDLSAKRNxxxMLFNCAQERAIGYLIRNLDAVPKWGDLLQMVVLELIRKVCRSNPAEKGKYIKIIISLLNSSSTAVMYECAATLVSLSSAPTAIRAAANTYCQLLLSQSDNNVKLIVLDRLQELKVSHRDVMVDMIMDVLRALSSPNLDIRRKTLDIALELITPRNIDEVVMTLKKEVVKTQSGELEKNGEYRQMLVQAIHSCAVKFPEVASTVVHLLMEFLGDSNLASAMDVVLFVREIIETNPKLRVSIIARLLDTFYQIRSSRVCSCALWIIGEYCLSLSEVENGISTINQCLGELPFYTVAEDAEG-----LVTNKSQPANAITVSSRRPAILADGTYATQSAASEIAVATAAMLPGSAAATGNLRSILLTGDFFLGAVIACTLTKLILRLDEVQPSGVAVNKAAAEALLIMVSMLRLGQSSVLPHPIDDDSYDRISLCIRILTCPDDFFKKVWLQSCRESFMNMLADKQFRETEENKAKAQVSHAQPDDLIDFRLLKSRKGMSQLELEDEVEDDLKRATGEFVKDGGSMNKLNRILQLTGFSDPVYAEAYVTVHQYDIVLDVTVINRTKDTLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETTSVLDRNVVVLNDIHIDIMDYISPATCPDVAFRNMWAEFEWENKVAVNTTIQDEKEFLTHIVNSTNMKCLAPLSALDGDCGFLAANLYAKSVFGEDALVNVSVEKQPDGKLSGYIRIRSKTQGIALSLGDKITLKQKG

SNPs (tot: 55)

Position	A %	C %	G %	T %	Probability
116			25	75	0.996473
118		75	25		0.996473
124	75			25	0.996473
132		50	50		1.0
159		75		25	0.996473
235			73	26	1.0
262		23		76	1.0
419		14	85		0.993533
950		50	50		1.0
1028	16		83		0.994512
1136	33	66			1.0
1151	50	50			1.0
1178		16	83		0.994512
1180	83			16	0.994512
1181	83	16			0.994512
1184			16	83	0.994512
1186		16		83	0.994512
1187		16	83		0.994512
1188			83	16	0.994512
1192	83	16			0.994512
1194	83		16		0.994512
1196		16	83		0.994512
1328	80	20			0.995493
1329	80		20		0.995493
1330	80			20	0.995493
1335		80		20	0.995493
1336	80			20	0.995493
1338	80			20	0.995493
1342		20	80		0.995493
1344		20	80		0.995493
1406			20	80	0.995493
1516	71			28	1.0
1517	71	28			1.0
1521	71	28			1.0
1652		60		40	1.0
1720		66		33	1.0
1732	66		33		1.0
1760		60	40		1.0
1767	20		80		0.995493
1816	88			11	0.923564
2099	12			87	0.992554
2100		87		12	0.992554
2101		87	12		0.992554
2102			12	87	0.992554
2103	87		12		0.992554
2839		11		88	0.923564
2915	10		90		0.90298
2965		10		90	0.90298
3003	90		10		0.90298
3037	90		10		0.90298
3038	90		10		0.90298
3223	88			3	0.998862
3224	11			84	1.0
3367		72		27	1.0
3402	82			11	0.999919

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain