SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18877

Length: 1340 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene18877 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	clathrin coat assembly protein ap19, putative	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	clathrin assembly protein ap19 homolog	-	-	97%

Source	GOs	Term	Type	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	97%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	97%
Blast2go	protein binding	GO:0005515	Molecular Function	97%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	97%
Blast2go	clathrin coat of trans-Golgi network vesicle	GO:0030130	Cellular Component	97%
Blast2go	clathrin adaptor complex	GO:0030131	Cellular Component	97%
Blast2go	mitochondrion	GO:0005739	Cellular Component	97%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUL0

Fln msg:

Fln protein: MIHFVLLISRQGKVRLTKWYSPYSQKERSKIIREISGVILTRGPKLCNFIEWRGFKVVYKRYASLYFCMCIDADDNELEVLEIIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARVIAAQDSLVESAKEQASSLSNIIAQATK*

Protein Length: 163

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTTCTCTTCATTCTTTCCATAATATTCTTATATTTTTTTTTGAATCGTCTGGCCCTTCCGATCTATAACAGGAAGTGCAGGATTTGACATTGAATACTGACGATTTCGTTTTAATGGCGTCTGCATAAAGTTTTCTCACCCGGCAATAGAGTTTTTCAGTCTGCCATATTCGGTTCGGCATTGAATTCTTTGAGATCTCTGCGAGTGACAGGCGTGGACTTCTGAGAATATCTCAACCTTACAGAAAGTGAACTTGCATTCTAGCTCATTGCATTGTGGATACCCCTGTATTGAGAGCGGAGGATCTTTGTGACA_-_ATGATTCACTTTGTGCTTCTGATCAGCCGGCAGGGCAAAGTGAGATTGACAAAGTGGTACTCTCCTTATTCACAGAAGGAACGTTCCAAGATAATCCGTGAAATTAGTGGAGTGATACTTACAAGAGGTCCAAAGCTCTGCAATTTCATTGAATGGAGAGGTTTCAAAGTTGTATACAAAAGGTATGCCAGTTTGTATTTCTGCATGTGCATCGATGCAGATGATAATGAGCTGGAGGTCCTTGAGATAATTCATCATTTTGTCGAGATACTTGATCGATACTTTGGGAGTGTTTGTGAGTTAGATCTCATCTTCAATTTTCATAAGGCCTATTATATATTAGATGAACTTCTGATTGCCGGGGAGCTCCAAGAGTCAAGTAAGAAGACGGTTGCACGTGTCATAGCTGCACAGGATTCTCTTGTGGAGAGTGCAAAAGAACAGGCTAGTTCTTTGAGCAATATCATTGCTCAAGCAACCAAATAG___AACCATGTTGTCAAATATTCTTAGAACCTTTTATGCGGTGGTTTTTATATGATTTTGTTTTTCTAGTCCGGTTTTTCTCATACAATCTGGCAGCTCTTACCTCTAAAGCTGCGAACAATTCATTGGATCACGGTTGTACCTTTAAGAATTGTGAGTGTCTATGAAGTTCTCATATATCCTGGCATATCTTGTACAATCTGGTAGGTCTCATCTCTAATGTTCTTAATAATACATTGAAGGACAGAGTTATTCCATTAGGTATCCCAAATTATTAGTTATTTGGGCTCTCAGGCAATAGCCAGTTTGAATTAGTTTGATTAGGTCTCTGTATTTTACTGTAATGAGTCTGTATTCTGTGACCTGTCTACAATTTCTCTGTTAATACTTTTTCCTCTTAGTGTGATTTGAAGCATTGCTACAGCTTATGGCATTATTATTATTAATTTTATGACTTCGATCACCAAGAAGAGACACAAATTATCCTTTGAAGTCATAAAATTGTTCTCTAATGCC

Fln Alignment:

sp_v1.1_unigene18877___MIHFVLLISRQGKVRLTKWYSPYSQKERSKIIREISGVILTRGPKLCNFIEWRGFKVVYKRYASLYFCMCIDADDNELEVLEIIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTV
A9NUL0_______________MIRFILLQNRQGKTRLAKYYIPLEESEKHKLEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSMCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAI

SNPs (tot: 90)

Position	A %	C %	G %	T %	Probability
155	11		88		0.923564
232		90	10		0.90298
251	10		90		0.90298
265	90		10		0.90298
341	90		10		0.90298
342	10			90	0.90298
343	90		10		0.90298
347		10	90		0.90298
349	90		10		0.90298
355	10			90	0.90298
356	90		10		0.90298
358	90			10	0.90298
363		90	10		0.90298
366	90		10		0.90298
423		87	12		0.992554
426	12	87			0.992554
431	12			87	0.992554
432			12	87	0.992554
436		12		87	0.992554
439	12		87		0.992554
440	85		14		0.993533
441	85			14	0.993533
442	85		14		0.993533
444	83		16		0.994512
445		83		16	0.994512
454	80	20			0.995493
455	80	20			0.995493
457	80			20	0.995493
458	60		40		1.0
461	20	80			0.995493
462	80		20		0.995493
463	60	20		20	0.99255
464	60		40		1.0
466		20		60	0.99255
467		80	20		0.995493
469			25	75	0.996473
470	75	25			0.996473
471		25		75	0.996473
474	75		25		0.996473
475	75		25		0.996473
476	50	25		25	0.995533
698	90			10	0.90298
699			10	90	0.90298
700	10	90			0.90298
701	10			90	0.90298
704		90	10		0.90298
709	90		10		0.90298
712		77	22		0.999999
714		85	14		0.993533
721	85		14		0.993533
724	85	14			0.993533
810	90		10		0.90298
1107		10		89	0.999919
1173			13	86	0.999973
1176	13	86			0.999973
1178	13		86		0.999973
1180		13	86		0.999973
1181		13		86	0.999973
1182	14		85		0.999981
1185	85		14		0.999981
1186	84			15	0.999986
1187	84	15			0.999986
1192			15	84	0.999986
1194		14		85	0.999981
1217	10	90			0.90298
1223		20		80	0.999996
1225			10	90	0.90298
1226		11		88	0.923564
1230			11	88	0.923564
1235	88	11			0.923564
1236	88		11		0.923564
1237	11			88	0.923564
1239		88	11		0.923564
1283	25			25	1.0
1284	75		25		0.996473
1286	75		25		0.996473
1289		11		88	0.923564
1291	88	11			0.923564
1292		11	88		0.923564
1295			11	88	0.923564
1296	88		11		0.923564
1298		11		88	0.923564
1300		22		77	0.999999
1305	88	11			0.923564
1319	62	12			1.0
1321	71	28			1.0
1322		28		71	1.0
1323	14	14	71		0.984337
1324	71	14		14	0.984337
1325	16		83		0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
72	84	TAA TAA TAA TAA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain