SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18865

Length: 1275 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18865

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Adenosine 3'-phospho 5'-phosphosulfate transporter, putative	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	26%
Blast2go	protein	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	0.0	84%
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	UAA transporter	IPR013657	-	0.0	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRK5

Fln msg: your sequence is longer than subject: 360 - 329

Fln protein: MGREGNLNDSNPSMSLLGITLTGKPKWLQLLICAAGFFFGYLVNGICEEYVYNRLQFSYGWYFTFIQGFVYLALIYLNGFRIRDIQNPWKIYVNLSAVLMGSQGLTKGSLMFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPLEEYIAAMLLVVGLIIFTLADAQTSPNFSVWGVIMVCGALILDAFLGNLQEAIFTLNPSTTQMEMLFCSTAVGLPFLIPPMILTGELFKAWEACSQHLYVYLVLIFEATATFVGQLSVLCLIAIFGAATTAMVTTARKAVTLLLSYIIFTKPITEKHATGLLLIAMGIILKMLPNPMPNTARKQNNSEAFANQPSKMVASSKEDLEESRALKSDT*

Protein Length: 361

Fln nts: CGTCGTGACCTTGGCTGTCCCTCATAAATTCGTCGTGACCTTGGCTGTCACTCAGCGTTTTGTATGGCCATGATCGCTCATTTTGTTGGGTTTGGGTTTGCTAAGCTCCTAATTGGAAGGAGGCGGATGCGCTTCTGCACCATTGGTCTGTAATTACTCTCAGACC_-_ATGGGTCGTGAAGGGAATTTAAATGACAGCAATCCTTCTATGAGTCTGTTGGGTATTACCTTAACAGGTAAACCAAAATGGCTTCAGCTCCTCATCTGCGCTGCGGGATTCTTCTTTGGGTATTTGGTGAATGGAATTTGTGAGGAATACGTGTATAATAGATTACAATTCAGCTATGGATGGTATTTCACCTTTATACAAGGATTTGTGTATTTGGCGCTTATCTATCTCAATGGCTTCAGAATAAGGGATATACAAAATCCATGGAAAATATACGTAAACCTCTCTGCTGTACTCATGGGGTCCCAAGGATTAACCAAGGGATCTCTAATGTTTCTTAATTATCCGGCCCAAATCATGTTCAAGTCCACCAAGGTTTTGCCTGTTATGATTATGGGAGCCTTTATACCAGGCTTAAGGCGAAAGTATCCCTTGGAGGAATACATCGCGGCGATGTTGCTTGTCGTTGGTTTGATAATCTTCACACTGGCAGATGCCCAAACATCCCCAAATTTCAGTGTGTGGGGAGTTATTATGGTCTGTGGAGCTCTGATTTTGGATGCCTTTTTGGGTAACTTGCAAGAGGCCATATTTACTCTGAATCCTTCTACTACACAAATGGAAATGCTGTTCTGCTCTACTGCTGTGGGACTCCCCTTCTTGATTCCTCCAATGATTTTGACTGGAGAGCTCTTCAAAGCCTGGGAAGCCTGCTCACAACACTTATATGTTTATCTCGTGCTGATATTCGAAGCAACAGCCACCTTCGTAGGCCAGCTGTCTGTTCTGTGTTTAATAGCAATCTTCGGAGCTGCCACAACTGCCATGGTGACAACGGCGAGAAAGGCGGTAACATTGCTTCTATCATATATCATATTCACAAAGCCTATCACGGAGAAGCACGCAACTGGATTGCTTCTGATAGCCATGGGAATTATATTGAAAATGCTTCCAAATCCCATGCCTAATACCGCGAGAAAACAAAACAACAGTGAAGCTTTTGCGAACCAGCCATCCAAAATGGTTGCTTCTTCCAAAGAAGATTTAGAAGAAAGCAGGGCACTTAAATCAGATACATAA___TCATGCTGTGATGTGCTGTATACTATATT

Fln Alignment:

sp_v1.1_unigene18865___LTGKPKWLQLLICAAGFFFGYLVNGICEEYVY------NRLQFSYGWYFTFIQGFVYLALIYLN----GFRIRDIQNPWKIYVNLSAVLMGSQGLTKGSLMFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPLEEYIAAMLLVVGLIIFTLADAQTS-------PNFSVWGVIMVCGALILDAFLGNLQEAIFTLNPSTTQMEMLFCSTAVGLPFLIPPMIL--TGELFKAWEACSQHLYVYLVLIFEATATFVGQLSVLCLIAIFGAATTAMVTTARKAVTLLLSYIIFTKPITEKHATGLLLIAMGI
A9NRK5_______________ITQFQRLLRLLFCVGGIFGAYIYQGFLQETLSTKRFGPNGQRFQHLPFLNFAQNVVCLAWSYLMITLWSTKSSGAAPPWK-YWSPSITNTIGPALGLQALKYISYPAQVLVKSSKMIPVMLVGALFYGI--KYTVPEYICTFLVASGVSLFALSKSSSKTVSKLAHPN-APWGYGLCLANLLLDGYTNSTQDNIKRRYPKTNGWDIMLGMNLWGSIYSFFYMFLFPGGGGFEALQFCKQHPEAAWDILWFCVCGAIGQNFIFMTISLFGSLANTTITTVRKFFSILVSSLFSGNPLSDRQWISVFMVFGGL

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
52	12	87			0.992554
53			12	87	0.992554
55	62		25	12	1.0
60		20		80	1.0
61			20	80	1.0
65		20		80	1.0
66	80	20			1.0
68			80	20	1.0
70		80	20		1.0
78	20		80		1.0
416	16		83		0.999991
521	83	16			0.994512
523	83		16		0.994512
525		83	16		0.994512
530			16	83	0.994512
531	16	83			0.994512
532	83	16			0.994512
535			16	83	0.994512
588	20		80		0.995493
701		50		50	1.0
702		50		50	1.0
703	50			50	1.0
716	25	50	25		1.0
717	75		25		0.996473
812	71	28			1.0
813		71	28		1.0
817		28		71	1.0
818			71	28	1.0
823	71			28	1.0
825	28			71	1.0
827		85		14	0.993533
828	14	85			0.993533
829	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain