SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18858

Length: 1370 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18858

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome B5 isoform 1, putative n=2 Tax=Euphorbiaceae RepID=B9S527_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	cytochrome b5	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nitrate reductase (NADH).	EC:1.7.1.1	-	0.0	87%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Nitrogen metabolism	00910		0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	87%
Blast2go	electron transport chain	GO:0022900	Biological Process	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	nitrate reductase (NADH) activity	GO:0009703	Molecular Function	87%
Blast2go	heme binding	GO:0020037	Molecular Function	87%
Blast2go	endoplasmic reticulum membrane	GO:0005789	Cellular Component	87%
Blast2go	microsome	GO:0005792	Cellular Component	87%
Blast2go	integral to membrane	GO:0016021	Cellular Component	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NST8

Fln msg:

Fln protein: MASDAKVYKLEDVSRHNTHQDCWIVIEGKVYDVTKFLEDHPGGDEVLISATGKDATDDFEDVGHSDSARAMMDEYYVGDIDPSSVPSKPKYTPAKQAPYNPDKSSEFIIKILQFLVPLLILGLAVAVRYYTKSS*

Protein Length: 136

Fln nts: ATGGGGAGTTGATGTTTGAGGGATATTCTGCATCTCCAATACCACGGCGACCCACCCAACATCAACATTCGTTTTATAGGGGCCAGGTGGTTTTTTCCAAAGAATTCCAAGGTTGGACCTTATTCATTTATTCCATGTTTTCACCCACTTTCCCAGCTGCAGGCCTGAGGCTGACACGTTGATAACTGCGGCTTTCACTCAATCAAAACGCTGCCCAACTAACCATTACGAGCACGCCCATTGAATCTGTTTTTTGTATCTTATTCTGGGCAAT_-_ATGGCTTCGGATGCCAAGGTCTACAAACTTGAAGATGTTTCAAGACATAACACTCATCAGGATTGCTGGATAGTGATTGAAGGAAAGGTGTATGATGTAACCAAATTTTTGGAGGACCATCCTGGCGGAGATGAAGTGTTGATCTCAGCAACTGGTAAAGATGCAACCGATGACTTTGAAGATGTTGGACATAGTGACAGTGCTAGAGCTATGATGGATGAATATTACGTGGGAGACATAGATCCCTCATCAGTTCCCTCGAAGCCAAAATACACTCCGGCTAAGCAGGCACCATACAATCCTGACAAGTCATCTGAATTTATCATAAAAATTTTACAGTTTCTTGTTCCATTGCTCATTTTGGGCTTGGCTGTTGCTGTCCGCTACTATACCAAATCAAGCTAA___AATTCAGGAATTTCTATAGGATTCCACCATTGTTTAAGATATATATATCTATGTATTTGTGTGAGTTATGTCGTTAGTCTGGCTTCTATTGTTGTAATTATTTGGAACCATAGTAACAAGATCAGGTTGGCTAGAACTGTTTCAATGCAAATTGTCGCAAAAAAATTACTTACTGTAATAGTATCAACTAAAATGGACTTTTTGATCGACATGATAACAGCTAATGGGACTTCTCATGGGAAAGGGGGTTTAACAAATGAAACTGCACATGAGATAAATGAGATGACAGGCTCGCTGATCAGAATGCCCGTTGACCATCTTATTTGGAGTGTTTTTCATGCAGGCCATCTTCTGTTATTGGGCATTTTGTTTTCTTTCAAGTTCACTGGTTGCCTCTCATTGTTAGAGTTTGTCCCATTATGTTTCTTGGTTGCCATTTATCTCATGAACTGCTCTCTAATGAGAATGTCTCTGGATCATTTTCAGATCAGTTTTGGGTGAGAGGTTTTTTGGCATGTGGAATGCAACATTGCAATTTTTCATATGGCTATTGTTTTCTGCAAGCAATAACAACCCTGCTGCACAACAGAATGGCAGTTTATGTGCAGATATAATACCATTATATGTGCCACCATATGCCTGTGCATATTACATTCAACGGTGTATATGTCCACACACTGCATAATACAAT

Fln Alignment:

sp_v1.1_unigene18858___MASDAKVYKLEDVSRHNTHQDCWIVIEGKVYDVTKFLEDHPGGDEVLISATGKDATDDFEDVGHSDSARAMMDEYYVGDIDPSSVPSKPKYTPAKQAPYNPDKSSEFIIKILQFLVPLLILGLAVAVRYYTKSS
A9NST8_______________MDSDTKVYRLEDVSKHNTHQDCWLVIDGKVYDVTKFLEDHPGGDEVLISATGKDATDDFEDVGHSSSARAMMDEYYVGDIDPSTIPSKPKYTPAKQAPYNPDKSSEFIIKILQFLVPLLILGMAVAVRYYTKSS

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
158		87	12		0.999964
159			12	87	0.999964
230		88	8	2	0.999999
232	88		11		1.0
296		93		6	0.999453
324	87		12		1.0
358			94	5	0.9982
359	94	5			0.997984
1095		85	14		0.993533
1097	85		14		0.993533
1099			14	85	0.993533
1101		14		85	0.993533
1102		14	85		0.993533
1105			14	85	0.993533
1109		14	85		0.993533
1110	14		85		0.993533
1111		14		85	0.993533
1113		14	85		0.993533
1114	14	85			0.993533
1160	14			85	0.993533
1168		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain