SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18851

Length: 2587 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene18851
CGTCGTGACCTTGGCTGTCACTCAATTTTTTTTCCCAATGCAATGGAGCTTTACGTCCCGCGATCGAATCTTGGCGCCAGCATTAAACCTCCCACATGACCGTGGCGTCCACGTTTGTATCAGATCATTCGTATCTAACCAGAACACCGTTCAAAAACCTCCAAAACCCTAGTTTTTTTTGTCTTTTGAACATACAACGGAGCTCTGGTTATGTCTCGTTATGTCAATGCCTCGTTTTCCATGGCTGTTGGACCGCAATGCAACGGTTTGGAGCAAAAGACGAACTATTCGGAAAGCCCTGTTTAAACATTTCCGTTCCCCCCTGGGTTTATTAGCAAGGGCACTGTAAGAAAGTTTTGCATGGCACTGGAAGAACCAGGTTAACTTAATATTCAATCAGGTTTTTATTTAATCAAACGCTCACAATGTCGTCTCTGAGGCACGTTGGCAAAACCTTGTTCAGAGCTTTCAGGTGTAAGCCCTCGCGTTCAATCACTACAACGCCCTCATTATTGCAGCAAACCGAGCTCGAAATCACGACCCCTGCCCAGAACGATTCGGCGCCCCAGACAACCCCGCTTCCAAGCCGAGCAACGCCTTTGCCCGGTGTGCCTCAACCCCAGGCCGCGGGCAGCACATTGTATCAGGAAAATTGGATAAACCCAGCGAGTTCTGACCCCGTTGCTCCGCAATCTCTCATTCCCATTGGCTTGTCATCTGAGCACCGTCTCGTTCGTCCAGCACCATATGACGAGCGCTCGGCGACCAGACTGCAGATGTTTTCCCAGTCGCTCGATTTGCCCAATATATTGAATGTGTTTGCAGACTGGATGACTTCACAGAAGTGGTCCGACATTAAGGAGCTGTTCGAGCTGTGGTTGAGATCGCTGGATCAGGCTGGCAAGCCTAACAAGCCTGACATTAATCTATATAATCATTACTTGCGTGCTAATTTGATGATTGGCGCATCCGCCGGCGAGTTGCTGGATTTGGTCGCACAGATGGGAGATTACGGAATTCTGCCCAACACTGCTTCCTTCAACTTAGTATTGAAGGCAATGTACCAGGCGCGGGAGAGCGATGCAGCTGTCAAGTTAATTGAACGGATGATACAGACAGGGGAGGAGGCTTCACCGGATGAGGAATCCTTTGACCTTGTCATTGGCCTACTATTCCTTGTAGATCAAATTGATCCAGCACTGAAATTTCTAGACTTAACATTGAAATCTGGTTATACGCTGTCAACTAGCGTGTTCAGTGACTCTGTTCGGGCCTGTGTAAACGCGGGCAGATTGGACACTTTGATGTCCATTATAGAGAGATGTAAGGCAATGGATCAGAACAAGGCGTTGTGTCCACCTTGGAGCTTGTCCACATACATCACAGATGTTGCAGTGGAGGCAGACCATAGCAAGTTAGCATATTATGGGCTGGAATTCTTGGCCCGATGGATTGCTCGAGGCAAGTCTGCTCGACCACCTGTTCTACTATCAGTTGATGAAGGCCTTGCAATTGCTGCACTTGGAACAGCTGCCAGGACTTGTAGTGCTCCTCTTCTAAAGGCAGCATGGGAGATACTTATACGATCTCTGCTGCAGAAGAGGCTGCCAAGCGTGGAATCATATCTTGCAAAGATACATGCTTTTGCAGCATTAGGTGAACTTAAATTTGCATTCCGTGCTTTACAGGAACTTGAATCTGCATACAGTAATCCTGAATCAGATGAAGACTTAGAGATATTTTCTCCTTTCTCATCTTTGAGTCCACTTGTACGGGCTTGTTCTAAGGGTGGGTTTTCTACATTGGATGCGGTTTATTTCCAACTGGAGAATTTGAGCCGGGCAAAGACTCCATACAAGTCAGTAGCAGCAGTCAACTGCGTAATATTGGGCTGTTCGAACATCTGGGACCTTGACCGAGCCTTTCAGACATTTGAAGCCATTCAAAAGACTTTTGATTTGACTCCTGATATCCACTCGTTTAATGCATTGATGAGTGCATTTGGAAAAATGAAGCAGACATTTGAAGCATCAAATGTTTTTGCTCACATGACAAGCTTGGGTGTCAAGCCAAATGAAAAGTCATATTCTTTATTGGTTGATGCCCATCTCATTAATCGGGACACAAAATCTGCTTTGGGCGTGGTTAAGGACATGATGCTTTCTGGTTATACACCATCAAAAGAGACTCTTAAAAAGCTCAAAAGGCGGTGTGTTCGTGAATTTGATGTCGATGGGGAGGAAGAAGTTCGATCTCTGTTTCAACAACTGAACTATCGGATGGGTGGTGAAAATCGTCGTGGAATCCTTTTTGGGCTTCAGTACAGTACAGAATTTGTTTAGTGGCTTTCTGAAGTATTGTTGATAGACATTATGTGCTGTTACATTGTTTCATTATTTAGAAGTCTTATACAAAAGCTTTGGCAGGGGTAGTCTGTATTTGTTGCTTTGGCATTGCTGGATAAATTTCATTGCTTTGACTAAAGTCATTCAGATGAAGTTCCTTCTTCTTCTTCTTTTGCTATGTACTACACCACATTTGCAAAGCTTCTAATCTAATAATTCCTCTGCTGGGATTGTTGATGGCG

Ace file of the UniGene sp_v1.1_unigene18851

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pentatricopeptide repeat-containing protein, putative	-	-	59%
FL-Next	sp=Pentatricopeptide repeat-containing protein At1g26460, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	57%
Blast2go	pentatricopeptide repeat-containing protein	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	lipid metabolic process	GO:0006629	Biological Process	71%
Blast2go	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	71%
Blast2go	mitochondrion	GO:0005739	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	0.0	71%
Blast2go	Alpha-macroglobulin, receptor-binding	IPR009048	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FZD1

Fln msg:

Fln protein: MSSLRHVGKTLFRAFRCKPSRSITTTPSLLQQTELEITTPAQNDSAPQTTPLPSRATPLPGVPQPQAAGSTLYQENWINPASSDPVAPQSLIPIGLSSEHRLVRPAPYDERSATRLQMFSQSLDLPNILNVFADWMTSQKWSDIKELFELWLRSLDQAGKPNKPDINLYNHYLRANLMIGASAGELLDLVAQMGDYGILPNTASFNLVLKAMYQARESDAAVKLIERMIQTGEEASPDEESFDLVIGLLFLVDQIDPALKFLDLTLKSGYTLSTSVFSDSVRACVNAGRLDTLMSIIERCKAMDQNKALCPPWSLSTYITDVAVEADHSKLAYYGLEFLARWIARGKSARPPVLLSVDEGLAIAALGTAARTCSAPLLKAAWEILIRSLLQKRLPSVESYLAKIHAFAALGELKFAFRALQELESAYSNPESDEDLEIFSPFSSLSPLVRACSKGGFSTLDAVYFQLENLSRAKTPYKSVAAVNCVILGCSNIWDLDRAFQTFEAIQKTFDLTPDIHSFNALMSAFGKMKQTFEASNVFAHMTSLGVKPNEKSYSLLVDAHLINRDTKSALGVVKDMMLSGYTPSKETLKKLKRRCVREFDVDGEEEVRSLFQQLNYRMGGENRRGILFGLQYSTEFV*

Protein Length: 640

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTTTTCCCAATGCAATGGAGCTTTACGTCCCGCGATCGAATCTTGGCGCCAGCATTAAACCTCCCACATGACCGTGGCGTCCACGTTTGTATCAGATCATTCGTATCTAACCAGAACACCGTTCAAAAACCTCCAAAACCCTAGTTTTTTTTGTCTTTTGAACATACAACGGAGCTCTGGTTATGTCTCGTTATGTCAATGCCTCGTTTTCCATGGCTGTTGGACCGCAATGCAACGGTTTGGAGCAAAAGACGAACTATTCGGAAAGCCCTGTTTAAACATTTCCGTTCCCCCCTGGGTTTATTAGCAAGGGCACTGTAAGAAAGTTTTGCATGGCACTGGAAGAACCAGGTTAACTTAATATTCAATCAGGTTTTTATTTAATCAAACGCTCACA_-_ATGTCGTCTCTGAGGCACGTTGGCAAAACCTTGTTCAGAGCTTTCAGGTGTAAGCCCTCGCGTTCAATCACTACAACGCCCTCATTATTGCAGCAAACCGAGCTCGAAATCACGACCCCTGCCCAGAACGATTCGGCGCCCCAGACAACCCCGCTTCCAAGCCGAGCAACGCCTTTGCCCGGTGTGCCTCAACCCCAGGCCGCGGGCAGCACATTGTATCAGGAAAATTGGATAAACCCAGCGAGTTCTGACCCCGTTGCTCCGCAATCTCTCATTCCCATTGGCTTGTCATCTGAGCACCGTCTCGTTCGTCCAGCACCATATGACGAGCGCTCGGCGACCAGACTGCAGATGTTTTCCCAGTCGCTCGATTTGCCCAATATATTGAATGTGTTTGCAGACTGGATGACTTCACAGAAGTGGTCCGACATTAAGGAGCTGTTCGAGCTGTGGTTGAGATCGCTGGATCAGGCTGGCAAGCCTAACAAGCCTGACATTAATCTATATAATCATTACTTGCGTGCTAATTTGATGATTGGCGCATCCGCCGGCGAGTTGCTGGATTTGGTCGCACAGATGGGAGATTACGGAATTCTGCCCAACACTGCTTCCTTCAACTTAGTATTGAAGGCAATGTACCAGGCGCGGGAGAGCGATGCAGCTGTCAAGTTAATTGAACGGATGATACAGACAGGGGAGGAGGCTTCACCGGATGAGGAATCCTTTGACCTTGTCATTGGCCTACTATTCCTTGTAGATCAAATTGATCCAGCACTGAAATTTCTAGACTTAACATTGAAATCTGGTTATACGCTGTCAACTAGCGTGTTCAGTGACTCTGTTCGGGCCTGTGTAAACGCGGGCAGATTGGACACTTTGATGTCCATTATAGAGAGATGTAAGGCAATGGATCAGAACAAGGCGTTGTGTCCACCTTGGAGCTTGTCCACATACATCACAGATGTTGCAGTGGAGGCAGACCATAGCAAGTTAGCATATTATGGGCTGGAATTCTTGGCCCGATGGATTGCTCGAGGCAAGTCTGCTCGACCACCTGTTCTACTATCAGTTGATGAAGGCCTTGCAATTGCTGCACTTGGAACAGCTGCCAGGACTTGTAGTGCTCCTCTTCTAAAGGCAGCATGGGAGATACTTATACGATCTCTGCTGCAGAAGAGGCTGCCAAGCGTGGAATCATATCTTGCAAAGATACATGCTTTTGCAGCATTAGGTGAACTTAAATTTGCATTCCGTGCTTTACAGGAACTTGAATCTGCATACAGTAATCCTGAATCAGATGAAGACTTAGAGATATTTTCTCCTTTCTCATCTTTGAGTCCACTTGTACGGGCTTGTTCTAAGGGTGGGTTTTCTACATTGGATGCGGTTTATTTCCAACTGGAGAATTTGAGCCGGGCAAAGACTCCATACAAGTCAGTAGCAGCAGTCAACTGCGTAATATTGGGCTGTTCGAACATCTGGGACCTTGACCGAGCCTTTCAGACATTTGAAGCCATTCAAAAGACTTTTGATTTGACTCCTGATATCCACTCGTTTAATGCATTGATGAGTGCATTTGGAAAAATGAAGCAGACATTTGAAGCATCAAATGTTTTTGCTCACATGACAAGCTTGGGTGTCAAGCCAAATGAAAAGTCATATTCTTTATTGGTTGATGCCCATCTCATTAATCGGGACACAAAATCTGCTTTGGGCGTGGTTAAGGACATGATGCTTTCTGGTTATACACCATCAAAAGAGACTCTTAAAAAGCTCAAAAGGCGGTGTGTTCGTGAATTTGATGTCGATGGGGAGGAAGAAGTTCGATCTCTGTTTCAACAACTGAACTATCGGATGGGTGGTGAAAATCGTCGTGGAATCCTTTTTGGGCTTCAGTACAGTACAGAATTTGTTTAG___TGGCTTTCTGAAGTATTGTTGATAGACATTATGTGCTGTTACATTGTTTCATTATTTAGAAGTCTTATACAAAAGCTTTGGCAGGGGTAGTCTGTATTTGTTGCTTTGGCATTGCTGGATAAATTTCATTGCTTTGACTAAAGTCATTCAGATGAAGTTCCTTCTTCTTCTTCTTTTGCTATGTACTACACCACATTTGCAAAGCTTCTAATCTAATAATTCCTCTGCTGGGATTGTTGATGGCG

Fln Alignment:

sp_v1.1_unigene18851___PSRSITTTPSLLQQTELEITTPAQNDSAPQTTPLPSRATPLPGVPQPQAAGSTLYQENWINPASSDPVAPQSLIPIGLSSEHRLVRPAPYDERSATRLQMFSQSLDLPNILNVFADWMTSQKWSDIKELFELWLRSLDQAGKPNKPDINLYNHYLRANLMIGASAGELLDLVAQMGDYGILPNTASFNLVLKAMYQARESDAAVKLIERMIQTGEEASPDEESFDLVIGLLFLVDQIDPALKFLDLTLKSGYTLSTSVFSDSVRACVNAGRLDTLMSIIERCKAMDQNKALCPPWSLSTYITDVAVEADHSKLAYYGLEFLARWIARGKSARPPVLLSVDEGLAIAALGTAARTCSAPLLKAAWEILIRSLLQKRLPSVESYLAKIHAFAALGELKFAFRALQELESAYSNPESDEDLEIFSPFSSLSPLVRACSKGGFSTLDAVYFQLENLSRAKTPYKSVAAVNCVILGCSNIWDLDRAFQTFEAIQKTFDLTPDIHSFNALMSAFGKMKQTFEASNVFAHMTSLGVKPNEKSYSLLVDAHLINRDTKSALGVVKDMMLSGYTPSKETLKKLKRRCVREFDVDGEEEVRSLFQQLNYRMGGENRRGILFGLQYS
Q9FZD1_______________PIRAISGTPFLSQDPLLATESTDHDPSNHQST-----STPLP--PNP-ATGSPLYQENWRSPIPNTPSFNQSLVPLGFLNQ----APAP-------RIRALSETLDMNSLLNMFADWTASQRWSDMKQLFEVWVRSLDKNGKPNKPDVNLYNHYLRANLMMGASAGDMLDLVAPMEEFSVEPNTASYNLVLKAMYQARETEAAMKLLERMLLLGKDSLPDDESYDLVIGMHFGVGKNDEAMKVMDTALKSGYMLSTSVFTECVRSCVAKGRTDTLVSIIERCKAVDRNKSLCPSWILCNYIAEVAIQEDNSKLAFYAFEFMFKWITRGEMARPSVIFSVDEGLVVAGLASAARTCSSSLVEGSWTILKQSLRGRKAANPASYIAKINAYASLGNLQKAFTSLHELESAYADSEKEVVEEMLSPFTSLYPLVVACSKKGFETLDEVYFQLESLSQGDTPYKSVAALNCIILGCANTWDLDRAYQTFEAISASFGLTPNIDSYNALLYAFGKVKKTFEATNVFEHLVSIGVKPDSRTYSLLVDAHLINRDPKSALTVVDDMIKAGFEPSRETLKKLRRRCVREMDDENDDQVEALAKKFQIRMGSENRRNMLFNIDYS

SNPs (tot: 91)

Position	A %	C %	G %	T %	Probability
93		85	14		0.993533
94	85			14	0.993533
96	85		14		0.993533
102			85	14	0.993533
111	85			14	0.993533
160			25	75	1.0
161		75		25	1.0
163	66		25		1.0
164	63			36	1.0
165	63		36		1.0
169		63		36	1.0
171	63		36		1.0
176			10	90	0.90298
177	10	20		70	0.999998
178	20	20		60	0.999999
179	10	20		70	0.999998
180		20		80	0.999996
181	10	20		70	0.999998
182	20	10	10	60	0.999999
183	10		90		0.90298
198	86		13		1.0
199	86		4	9	0.999642
204		9	86		0.999642
215		9	90		0.999842
542	90			10	0.90298
543		90		10	0.90298
545		90	10		0.90298
547	10			90	0.90298
550		90		10	0.90298
551		90	10		0.90298
554	88		11		0.923564
659	50	50			1.0
724	12		87		0.992554
725		87		12	0.992554
726	87		12		0.992554
727		87	12		0.992554
728		87	12		0.992554
1865	14		85		0.993533
1887	25		75		1.0
2093	75	25			0.996473
2094			33	66	0.997452
2097			33	66	0.997452
2099			33	66	0.997452
2106		33		66	0.997452
2113	33	66			0.997452
2119	33	66			0.997452
2136	83	16			0.994512
2137	83		16		0.994512
2143		16		83	0.994512
2150		16	83		0.994512
2152	16		83		0.994512
2268			11	88	0.923564
2269	11			88	0.923564
2271	88	11			0.923564
2272	88			11	0.923564
2273		88		11	0.923564
2274	88		11		0.923564
2275	88		11		0.923564
2279	88	11			0.923564
2291		25	75		1.0
2294		25	75		1.0
2299	75	25			1.0
2300	75	25			1.0
2301	75			25	1.0
2303		66	25	8	1.0
2305		25		75	1.0
2306		75		25	1.0
2310		25	75		1.0
2312	75	25			1.0
2315	11	82		5	0.999919
2317	11			88	0.999952
2318		11		88	0.999952
2319		11		88	0.999952
2321			88	11	0.999952
2325		4	9	86	0.999642
2326			9	90	0.999842
2327		86	13		1.0
2328	86	9			0.999642
2329		9	86	4	0.999642
2331	77	9	4		0.999071
2332	9	86	4		0.999642
2333	90	9			0.999842
2334		9	86	4	0.999642
2336	86		4		0.999642
2338	90			9	0.999842
2364		7		92	0.999602
2365	92	7			0.999602
2369		7		92	0.999664
2375		7	92		0.999664
2517		90	9		0.999842
2594		80	20		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
2503	2517	CTT CTT CTT CTT CTT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain