SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18850

Length: 707 nt

Origin of reads: Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene18850 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tubulin folding cofactor A n=5 Tax=Poaceae RepID=A5CFZ2_HORVD	-	-	1.0e-35	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	tcp1-chaperonin cofactor a isolog	-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	82%
Blast2go	cytokinesis	GO:0000910	Biological Process	82%
Blast2go	tubulin complex assembly	GO:0007021	Biological Process	82%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	82%
Blast2go	microtubule	GO:0005874	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Tubulin binding cofactor A	IPR004226	-	0.0	82%

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
477	25		75		0.996473
563			75	25	0.996473
565	25		75		0.996473
566		75	25		0.996473
568			25	75	0.996473
569	25		75		0.996473
573		25		75	0.996473
575	25		75		0.996473
577			25	75	0.996473
578			25	75	0.996473
582	25		75		0.996473
584	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain