SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18840

Length: 896 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18840

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cl25046_1a; LOC100216896; K02955 small subunit ribosomal protein S14e	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	40s ribosomal protein s14	-	-	96%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	96%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	96%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	96%
Blast2go	ribosome	GO:0005840	Cellular Component	96%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein S11	IPR001971	-	0.0	96%
Blast2go	Ribosomal S11, conserved site	IPR018102	-	0.0	96%

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
79		14	85		0.993533
81		85		14	0.993533
83	14			85	0.993533
86	14	85			0.993533
88		14		85	0.993533
90		14	85		0.993533
91			85	14	0.993533
97	85			14	0.993533
98		85		14	0.993533
100		85	14		0.993533
101	85			14	0.993533
105		57		14	1.0
189		14		85	0.993533
316		16	83		0.994512
328		83	16		0.994512
511	85			14	0.993533
512	85		14		0.993533
513	85			14	0.993533
514		14	85		0.993533
822	2		97		0.979771
826	28			71	1.0
836		50		49	1.0
851	13	3	83		1.0
853	82	5	11		0.999919

SSRs (tot: 1)

Start position	End position	Sequence	Length
128	139	GA GA GA GA GA GA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain