SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18813

Length: 1925 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene18813 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9S1R1_RICCO	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Blast2go	pentatricopeptide repeat-containing	-	-	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	0.0	59%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	0.0	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLL9

Fln msg:

Fln protein: MQEKGTTPGEKEENSEKEKNDKEQKGSIPAQEKNPEKEKSSKEQKDTTPSEKPKPSSSEKPVGGVAGAGAASSAPSTSTSLLGPGPAAQQKSQQPPKSQRPPKPKTLEEKVDAICRLLSETSDVDQLGPELNMLGIKVTTELVEEVLKNSYKAGEAALKFFQWSVNLLGGKHSPYAWNLLVDVLGNNKMFDAMWDAAKSMKADGILSRQTFATIFTSYAMAEKANEAMMTFEVMEHYGCPQDVGAFNCLLCALCRCKQTTKALEFCKKMGDKFPPDADTYAILLEGWEKEGNAAKAKKTFGEMIARLGWDPLNTAAYNAFLGTLCKLGQVDEALKFLHVMRSRNCFPDKSFFSTAVHALCLQNRADEAGMVFETMMRCGHIPSTTTYNSMISAYCYAGRMDDCYRIFDGMVFNGAFPDSVTYNTIFQTLMKTRQMEEAASIFREMTRNEYDPDSDSFTMAVVVKDLNIASMVWKHMSSKGVFPSMESVNTFINTLCDGGKRAEALKYVEEMRDQGIKVSEEILKRVKLSESDKKDTAERSSKKRKERH*

Protein Length: 550

Fln nts: ATGGGAGAAAGAATGGCTTAAGAAA_-_ATGCAGGAGAAGGGTACGACTCCAGGCGAGAAGGAAGAGAACTCTGAAAAAGAGAAAAATGACAAAGAACAGAAGGGTTCGATTCCAGCTCAGGAAAAGAACCCCGAGAAAGAAAAAAGCTCCAAAGAACAGAAGGACACTACGCCTTCTGAAAAGCCGAAACCCTCATCGTCCGAGAAACCGGTAGGAGGAGTAGCGGGAGCAGGGGCAGCTTCTTCTGCTCCTTCGACGTCAACGTCTTTATTGGGACCTGGACCTGCAGCTCAGCAAAAGTCTCAACAACCTCCCAAGTCCCAACGACCCCCAAAACCCAAAACCTTAGAGGAGAAGGTGGATGCAATCTGCCGATTGCTCTCTGAAACTTCCGATGTGGATCAACTTGGACCTGAGCTCAATATGCTGGGCATTAAGGTTACGACTGAACTGGTGGAGGAAGTGCTGAAGAACTCGTACAAGGCGGGTGAAGCGGCCCTCAAGTTTTTCCAATGGTCTGTTAATCTGCTTGGGGGCAAGCACAGCCCTTATGCCTGGAATCTGCTTGTTGATGTTCTTGGCAATAACAAGATGTTCGATGCGATGTGGGATGCAGCGAAGTCCATGAAGGCCGATGGGATTCTCTCCCGCCAGACATTTGCTACTATTTTTACTTCCTACGCAATGGCAGAGAAGGCGAACGAGGCGATGATGACTTTTGAGGTGATGGAACATTACGGCTGCCCGCAGGATGTTGGCGCTTTCAATTGCCTTCTCTGTGCTCTGTGCAGGTGCAAGCAGACAACCAAGGCATTGGAGTTTTGCAAGAAGATGGGAGATAAATTCCCTCCAGATGCAGATACCTACGCAATTCTGTTGGAGGGCTGGGAGAAGGAAGGCAATGCGGCCAAAGCTAAGAAGACTTTTGGCGAGATGATCGCGCGGCTCGGGTGGGATCCCCTCAATACGGCTGCATATAATGCCTTCTTGGGCACCCTCTGCAAGTTAGGCCAAGTCGATGAGGCATTGAAGTTTCTGCATGTCATGAGGAGCAGAAATTGCTTTCCAGATAAGAGCTTTTTTAGCACTGCGGTTCATGCCCTTTGTCTCCAGAACAGAGCAGATGAAGCGGGCATGGTTTTTGAAACCATGATGCGGTGTGGGCATATTCCCAGCACCACCACTTACAATTCAATGATAAGTGCATACTGCTATGCTGGTAGAATGGACGATTGCTACCGTATTTTCGATGGAATGGTGTTCAATGGTGCGTTTCCTGATTCTGTAACTTACAATACTATTTTCCAAACCCTTATGAAGACACGACAAATGGAGGAAGCTGCCAGCATATTTCGCGAGATGACTAGAAATGAGTATGATCCAGATAGCGATAGTTTTACGATGGCCGTAGTCGTGAAAGATCTAAATATAGCCTCAATGGTTTGGAAACACATGAGCAGCAAGGGTGTTTTCCCTAGCATGGAGTCTGTCAACACCTTTATAAATACCCTCTGTGACGGTGGCAAGCGAGCAGAAGCACTGAAGTATGTGGAAGAAATGAGGGATCAAGGAATTAAAGTTTCAGAGGAAATCTTGAAGAGGGTAAAGTTATCTGAATCAGACAAGAAGGATACCGCTGAACGATCTTCAAAGAAGAGGAAGGAACGTCACTGA___CGAGGGAAGGCCGGCAATGGAATAGTTATTCAAATTCTAGATAACTTGATTAAAGAGGCACTCTTTTTTAGACAGAGTTCATTATGTTTGTAATGGAAAGCTGTATGTTTTCCGAGTGAACTGCTTTTCCATAATATATTGTCACAGACTTTTGGCTCTTTGTTCTTTATTTTTAGATCAGGCTTATGTTCCGGCTTAACAGTGAGTAACAACCTGTAACTGTTGATTTCAATTATTCGGTGTTTGCCTCGTG

Fln Alignment:

sp_v1.1_unigene18813___LNMLGIKVTTELVEEVLKNSYKAGEAALKFFQWSVNLLGGKHSPYAWNLLVDVLGNNKMFDAMWDAAKSMKADGILSRQTFATIFTSYAMAEKANEAMMTFEVMEHYGCPQDVGAFNCLLCALCRCKQTTKALEFCKKMGDKFPPDADTYAILLEGWEKEGNAAKAKKTFGEMIARLGWDPLNTAAYNAFLGTLCKLGQVDEALKFLHVMRSRNCFPDKSFFSTAVHALCLQNRADEAGMVFETMMRCGHIPSTTTYNSMISAYCYAG--RMDDCYRIFDGMVFNGAFPDSVTYNTIFQTLMKTRQMEEAASIFREMTRNEYDPDSDSFTMAVVV----KDLNIASMVWKHMSSKGVFPSMESVNTFINTLCDGGKRAEALKYVEEMRDQGIKVSEEILKRVK
B8LLL9_______________LNELGLEVSIQFVEDVLKLSYGAGMEAMKFFRWSGLKLSRKHSPLAWNLLVDLLGKEKLFDAMWDCIKVMKNQGIVSMETMSSVFGNYVQAGKVAEARMTFDVIEQYGCPQDVVALNCFLSAFCRYKQSKEALEFFDKVKEKIAPDADTYALLLEGLEIEGNVSKARTTFGEMIIRHGWLPNNTSAYNAFLSTLVNGSQVEEALKFLAVMKTRKCLPDLGFFRNTLQILYQRKDTKNAYGLWELMKQSGILLDLPSYNTMIGVFCSANPIQVDFAYRLLDEMVFTGIFPDFKTYNTIFEALITARKVEEASSIFREMTKNDFCPLYANYVMAIKMYFEADDPEMAVMMWKHMIQKAIFPKSDCAAILIDGFCDLGRASEALKYSLEAITRGVQIPVETMTKLK

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
392	15			84	0.999986
396	15			84	0.999986
401	15			84	0.999986
465		54		45	1.0
466		54	45		1.0
467	50	50			1.0
468			50	50	1.0
471	40	40			1.0
472		60		40	1.0
473	40		40	20	1.0
474		40	60		1.0
475		60		40	1.0
478	44			55	1.0
483		44		55	1.0
484	44			55	1.0
486		44	55		1.0
488	44	55			1.0
489	44		55		1.0
537	25	75			0.996473
540			25	75	0.996473
541		75		25	0.996473
543	33	66			0.997452
544		33		66	0.997452
546			33	66	0.997452
548		33		66	0.997452
549	33		66		0.997452
551	66		33		0.997452
555		33		66	0.997452
558			33	66	0.997452
1258		12		87	0.992554
1259	75	12			0.975346
1260	87	12			0.992554
1262	87			12	0.992554
1270	11	88			0.923564
1276	11			88	0.923564
1277		88	11		0.923564
1480	18		81		1.0
1600		20	80		0.995493
1601		20	80		0.995493
1602		20	80		0.995493
1603	20		80		0.995493
1814	42		57		1.0
1895	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain