SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18812

Length: 677 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18812

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATPPOX; ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5'-PHOSPHATE OXIDASE); pyridoxamine-phosphate oxidase (EC:1.4.3.5)	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	at5g49970 k9p8_11	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pyridoxal 5'-phosphate synthase.	EC:1.4.3.5	-	0.0	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Vitamin B6 metabolism	00750		0.0	78%
Blast2go	Metabolic pathways	01100		0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	pyridoxal metabolic process	GO:0042817	Biological Process	78%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	78%
Blast2go	pyridoxine biosynthetic process	GO:0008615	Biological Process	78%
Blast2go	pyridoxamine-phosphate oxidase activity	GO:0004733	Molecular Function	78%
Blast2go	FMN binding	GO:0010181	Molecular Function	78%
Blast2go	plastid	GO:0009536	Cellular Component	78%

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
526	80		20		0.995493
527	20		80		0.995493
611	66			33	0.997452
612	66	33			0.997452
613	66		33		0.997452
614		33		66	0.997452
616			33	66	0.997452
617		66		33	0.997452
618		66	33		0.997452
621			66	33	0.997452
622			33	66	0.997452
626			33	66	0.997452
629		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain