SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18790

Length: 1264 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18790

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor/ transcription initiation factor	-	-	4.0e-14	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	transcription factor iia large subunit	-	-	2.26779e-29	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	transcription initiation from RNA polymerase II promoter	GO:0006367	Biological Process	2.26779e-29	94%
Blast2go	RNA polymerase II transcription factor activity	GO:0003702	Molecular Function	2.26779e-29	94%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	2.26779e-29	94%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	2.26779e-29	94%
Blast2go	transcription factor TFIIA complex	GO:0005672	Cellular Component	2.26779e-29	94%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX18

Fln msg: Separated hits, possible frame ERROR between 255 and 543, your sequence is shorter than subject: 266 - 398

Fln protein: RRDLGCHSFSWELVQSKEVEFANQSLAQDCSMDGSMCEKRKVSDPLIAALIKAKYLSLKIPQADGVNDNLDSTVADEGYNEATDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKQALNDVATSKVSEDEEPLNDDDDDPDDLDQNSEDLKIDDLVLAQFEKVSRTKNRWKCILKDGVMHLNNKDILFSKATGEFDF*

Protein Length: 267

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCTTGGGAGTTAGTGCAATCAAAGGAGGTGGAATTTGCAAACCAAAGTCTTGCACAAGATTGTTCAATGGATGGATCAATGTGTGAAAAGAGGAAGGTGTCTGATCCTCTAATTGCTGCTCTCATTAAAGCCAAGTACCTATCTCTGAAAATTCCGCAGGCTGATGGTGTTAATGACAATCTAGACAGTACGGTTGCAGATGAAGGTTACAATGAAGCAACAGATCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGAGAAACAAGCTTTAAACGATGTTGCCACTTCGAAAGTGTCAGAGGATGAGGAGCCTTTAAATGATGATGATGATGATCCAGATGACTTAGATCAAAATAGTGAGGATCTAAAAATAGATGATCTAGTTCTTGCTCAGTTTGAGAAGGTGTCACGGACCAAGAATAGATGGAAATGTATTCTAAAAGATGGTGTAATGCATCTAAACAATAAAGATATTCTTTTCTCGAAGGCAACTGGGGAATTTGATTTTTAAGCCTTTAGATTACATGCAAGTATCCTGGATCATGTCCATTTAGTTATATGTTAGGGTTGAACTCCAACCCTTCAGTTTCGTCCACATTATCACTTGGACGTACTCTTTGGAACCATATATTCCAGAGTTCTTACTTTGGCTGTAATGATTTGCTCAAATTAATTAAAGTGTCTTTTCTCTTTGGTTTCATTAAGAAGCAGATTGCAACTCTGGAAAGTTTCATCTTTGTTTTGGTCTTTTTCCTTAATTAGCTTCCATTGATATTCTGAGGTGCGGATAAAATCGAATGTGCAAAAGCCGTCTATGACATTACTTGAAACCAGATGATGTACCTTGTAATAACTTTTCAAGTATTAGAACCCAGATATGATCGATATCATTACTGCTGAAATTGCGACGTGATAGATTGCATTACAGCCCAAATTTTTGTCCTGAAATACATGGAATATTTAATAGAAAAATATTTA

Fln Alignment:

sp_v1.1_unigene18790___GCHSFSWELVQSKEVEFANQSLAQDCSMDGSMCEKRKVSDPLIAALIKAKYLSLKIPQADGVNDNLDSTVADEGYNEATDQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKQALNDVATSKVXXXXXXXXXXXXXXXXXXXXXXXLKIDDLVLAQFEKVSRTKNRWKCILKDGVMHLNNKDILFSKATGEFDF
A9NX18_______________GAGDFSWELVQSKEVEFANQRLTQNCSMDGSMFEKRQMSDPLIAALVKAKCLSLEIPQVDGVNDNLDSTVADEGYIEATDQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEQQALNDVATSKVSEDEEALNDNDDDPDDLDLTNEDPKIDDLVLAQFEKVSRTKNRWKCILKDGVMHLNHKDILFSKATGEFDF

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
739		33		66	0.997452
742	66	33			0.997452
743	66		33		0.997452
748		33		66	0.997452
751	66			33	0.997452
752	66		33		0.997452
753	66		33		0.997452
755	66			33	0.997452
756	66		33		0.997452
758	66	33			0.997452
760	66	33			0.997452
761			66	33	0.997452
762	66	33			0.997452
777	83			16	0.994512
778	83	16			0.994512
780			83	16	0.994512
781		83	16		0.994512
783	83	16			0.994512
786			83	16	0.994512
789		16	83		0.994512
790	83			16	0.994512
791	83		16		0.994512
793		16		83	0.994512
794	16			83	0.994512
795		16	83		0.994512
796	83			16	0.994512
797		16		83	0.994512
798	16			83	0.994512
805		16		83	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
604	620	ATG ATG ATG ATG ATG AT	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain