SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18777

Length: 573 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18777

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ribulose bisphosphate carboxylase small chain PW9, chloroplastic n=38 Tax=Triticeae RepID=RBS2_WHEAT	-	-	94%
FL-Next	sp=Ribulose bisphosphate carboxylase small chain, chloroplastic; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	71%
Blast2go	protein	-	-	99%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ribulose-bisphosphate carboxylase.	EC:4.1.1.39	-	0.0	99%

Source	KEGGs	Term	Identity
Blast2go	Glyoxylate and dicarboxylate metabolism	00630	99%
Blast2go	Carbon fixation in photosynthetic organisms	00710	99%
Blast2go	Metabolic pathways	01100	99%

Source	GOs	Term	Type	Identity
Blast2go	reductive pentose-phosphate cycle	GO:0019253	Biological Process	99%
Blast2go	photorespiration	GO:0009853	Biological Process	99%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	99%
Blast2go	ribulose-bisphosphate carboxylase activity	GO:0016984	Molecular Function	99%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	99%
Blast2go	chloroplast	GO:0009507	Cellular Component	99%

Full-Lengther Next Prediction

SNPs (tot: 69)

Position	A %	C %	G %	T %	Probability
26		33	66		0.997452
29		33	66		0.997452
32		66		33	0.997452
33			33	66	0.997452
38			66	33	0.997452
39	66		33		0.997452
40			33	66	0.997452
42		66		33	0.997452
46	33		33	33	0.997753
48		75		25	0.996473
49	75	25			0.996473
50	66	16		16	0.988813
52	16			83	0.994512
53		16	66		0.988813
54		50	50		1.0
55			83	16	0.994512
58	16		16		0.988813
60		83		16	0.994512
61			16	83	0.994512
63		16	83		0.994512
64	16	66	16		0.988813
67		83	16		0.994512
69			83	16	0.994512
70	83	16			0.994512
71	16		83		0.994512
72		16		83	0.994512
74	16	83			0.994512
83		16		83	0.994512
90	75		25		1.0
94	25			75	1.0
97			75	25	1.0
103	75		25		1.0
104		75		25	1.0
105	75	25			1.0
107		87		12	0.992554
108			75	25	1.0
110	87		12		0.992554
116		87		12	0.992554
118		21	78		1.0
122	78		21		1.0
123		14		85	0.999981
124			21	78	1.0
127		21	78		1.0
128	78			21	1.0
129		14		85	0.999981
133		78		21	1.0
135		14	64	21	1.0
136		16		83	1.0
155	8			91	0.999807
156		8	91		0.999807
157		91		8	0.999807
159	8			91	0.999807
190	91	8			0.999807
231		8	91		0.999807
241	91		8		0.999807
249	91	8			0.999807
259	91	8			0.999807
264		34		65	1.0
296	91		8		0.999807
306		91		8	0.999807
318		91		8	0.999807
344		33	66		1.0
347	66		33		1.0
353		33		66	1.0
416	72		27		1.0
426		27		72	1.0
458		90		10	0.90298
475		80		20	0.999996
503	80		20		0.999996

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain