SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18761

Length: 1979 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene18761
ATGGGGAAACTAAATAATTGGACAGCTTCGTCAAAATACTGGAACGGGGCTCATTCCTTGAGATCAGCCCGCGATCGAGTCCCTGCACTCGCCATCGGCCACTGTCTACAAGGACTCTGGCACTCACAGGTTTCGCACTATTGAATTCCTTTCTGAAGTTCGCCTGGGCTTCTTGGATCCGGAAGGGTTTTTACTGCGCATTGCATCGGTGAATTATGCTGGCGGCCTATATTTGATTTTGACAATCTCGGCGCGCTAGTGGTTACCGGGAGAGCAAAGCGATAATACAGGGCAAACATGACAGAGAGCACGGGGTTTCAGCTGGGAACTGTTGGAGCTTTAAGTCTCTCTGTTATTTCCTCTGTTTCGATAGTCATCTGCAACAAGGCGCTCATCAGCACTCTCGGATTTAGCTTTGCCACAACATTGACCAGCTGGCATCTGCTGGTTACGTTCTGTTCTCTGCATATAGCATTATGGTTGAAACTGTTTGAACATAAGCCATTTGATGCACGGGCTGTAATGGGATTTGGTATTTTGAATGGTATCTCTATTGGACTTCTGAACCTCTGTCTGGGTTTTAACTCTGTTGGATTCTATCAGATGACCAAGTTGGCAATTATTCCTTGTACTGTTCTTTTGGAAACACTCTTTTTCCAAAAGGATTTCAGCCGGAAAATCCAGTTTTCACTTGTGATCCTTTTGGTGGGTGTTGGCATTGCTACTGTCACTGACTTGCAGCTCAATCTTCTAGGATCAGTCTTATCTCTGCTTGCAATAGTGACGACATGCGTTGCACAAATTATGACAAATACCATCCAGAAAAGATTCAAAGTTTCTTCAACACAGCTTTTGTACCAATCATGCCCATATCAAGCAACGACTTTGTTCATTACTGGTCCCTTTGTTGATGGGCTTTTGACAAACGAAAATGTGTTTGCATTTAAGTATACGCCTCATGTTCTAATTTTCATTGTTTTATCCTGTTTGATCTCCGTGTCTGTCAACTTCAGTACATTCCTTGTGATTGGCAAGACATCTCCAGTCACATATCAAGTTCTAGGGCACTTGAAGACTTGCTTGGTTCTGGCATTTGGCTACATTTTACTTCATGATCCATTTAGTTGGCGGAATATTCTGGGAATATTAATTGCTATAGTTGGCATGGGCTTGTATTCTTATTTTTGTGTAGTTGACAATCAGTCAAAACAAAGTGAGCCACCTGCACAACTGTCTCAGGTCAAGGATGGTGAAACAGAACCTCTTGTCATCCTCGAGAATGGATCCAACAAGGGAAATGATAATGTTGGTCCTAAGGGGCCTATATGGGCATCAAACAAGGATCTGCATGCTTAATCTAAAGCTTCACTACAGGGGTGATATCAATTCCTAAAGTTCCATTCTTTGATGAGGGTCAACTTGTTTGAGAGAAAATAGTTCTGTTGGAGCTTGTTTATGAAGGAGGTGAGCTGGACTGTTATTCATCAGAGGTTTGGATCATATATTCTATAGGACTGTAGACAATATTCATCAATTTTGCTGGTGAATTGTAGAATATTTTACGGCGGCAACTTTCTGCCAAATGGCCAATGAATGGATCCTGCTGGTTGATTTGTTTCATCGTAACTCAAATAGATTGGAGATTGCAGTACAAAACGTTTTTCTAAATGTTTGTAATGAGGTAACTAGTTGGAATAAGAAGTCCGCACTGAGCAAAGCTGCATTCAAATGAAAGCTGATCTGCTCAGCCATTGACAGTTTGTACGAGGTGGACATGTAAAGGTTTTCTTTCAAGAAAAATATTACAAGGCTTATCTTTTGTTCTCCATCCAATCAATATGTGACTGGTGAAGATAATAATGCATACATTAATAGACAGCTTATTGAAATTCTCTATTGTAGACAGTGACAAGCACTTGAGAAATGGTCCTAGTTAAAGTTTACTGTTTTCACAATGAAAGAAAATGTGATAAAATGTC

Ace file of the UniGene sp_v1.1_unigene18761 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	integral membrane	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	endomembrane system	GO:0012505	Cellular Component	89%
Blast2go	integral to membrane	GO:0016021	Cellular Component	89%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX31

Fln msg:

Fln protein: MTESTGFQLGTVGALSLSVISSVSIVICNKALISTLGFSFATTLTSWHLLVTFCSLHIALWLKLFEHKPFDARAVMGFGILNGISIGLLNLCLGFNSVGFYQMTKLAIIPCTVLLETLFFQKDFSRKIQFSLVILLVGVGIATVTDLQLNLLGSVLSLLAIVTTCVAQIMTNTIQKRFKVSSTQLLYQSCPYQATTLFITGPFVDGLLTNENVFAFKYTPHVLIFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYILLHDPFSWRNILGILIAIVGMGLYSYFCVVDNQSKQSEPPAQLSQVKDGETEPLVILENGSNKGNDNVGPKGPIWASNKDLHA*

Protein Length: 354

Fln nts: ATGGGGAAACTAAATAATTGGACAGCTTCGTCAAAATACTGGAACGGGGCTCATTCCTTGAGATCAGCCCGCGATCGAGTCCCTGCACTCGCCATCGGCCACTGTCTACAAGGACTCTGGCACTCACAGGTTTCGCACTATTGAATTCCTTTCTGAAGTTCGCCTGGGCTTCTTGGATCCGGAAGGGTTTTTACTGCGCATTGCATCGGTGAATTATGCTGGCGGCCTATATTTGATTTTGACAATCTCGGCGCGCTAGTGGTTACCGGGAGAGCAAAGCGATAATACAGGGCAAAC_-_ATGACAGAGAGCACGGGGTTTCAGCTGGGAACTGTTGGAGCTTTAAGTCTCTCTGTTATTTCCTCTGTTTCGATAGTCATCTGCAACAAGGCGCTCATCAGCACTCTCGGATTTAGCTTTGCCACAACATTGACCAGCTGGCATCTGCTGGTTACGTTCTGTTCTCTGCATATAGCATTATGGTTGAAACTGTTTGAACATAAGCCATTTGATGCACGGGCTGTAATGGGATTTGGTATTTTGAATGGTATCTCTATTGGACTTCTGAACCTCTGTCTGGGTTTTAACTCTGTTGGATTCTATCAGATGACCAAGTTGGCAATTATTCCTTGTACTGTTCTTTTGGAAACACTCTTTTTCCAAAAGGATTTCAGCCGGAAAATCCAGTTTTCACTTGTGATCCTTTTGGTGGGTGTTGGCATTGCTACTGTCACTGACTTGCAGCTCAATCTTCTAGGATCAGTCTTATCTCTGCTTGCAATAGTGACGACATGCGTTGCACAAATTATGACAAATACCATCCAGAAAAGATTCAAAGTTTCTTCAACACAGCTTTTGTACCAATCATGCCCATATCAAGCAACGACTTTGTTCATTACTGGTCCCTTTGTTGATGGGCTTTTGACAAACGAAAATGTGTTTGCATTTAAGTATACGCCTCATGTTCTAATTTTCATTGTTTTATCCTGTTTGATCTCCGTGTCTGTCAACTTCAGTACATTCCTTGTGATTGGCAAGACATCTCCAGTCACATATCAAGTTCTAGGGCACTTGAAGACTTGCTTGGTTCTGGCATTTGGCTACATTTTACTTCATGATCCATTTAGTTGGCGGAATATTCTGGGAATATTAATTGCTATAGTTGGCATGGGCTTGTATTCTTATTTTTGTGTAGTTGACAATCAGTCAAAACAAAGTGAGCCACCTGCACAACTGTCTCAGGTCAAGGATGGTGAAACAGAACCTCTTGTCATCCTCGAGAATGGATCCAACAAGGGAAATGATAATGTTGGTCCTAAGGGGCCTATATGGGCATCAAACAAGGATCTGCATGCTTAA___TCTAAAGCTTCACTACAGGGGTGATATCAATTCCTAAAGTTCCATTCTTTGATGAGGGTCAACTTGTTTGAGAGAAAATAGTTCTGTTGGAGCTTGTTTATGAAGGAGGTGAGCTGGACTGTTATTCATCAGAGGTTTGGATCATATATTCTATAGGACTGTAGACAATATTCATCAATTTTGCTGGTGAATTGTAGAATATTTTACGGCGGCAACTTTCTGCCAAATGGCCAATGAATGGATCCTGCTGGTTGATTTGTTTCATCGTAACTCAAATAGATTGGAGATTGCAGTACAAAACGTTTTTCTAAATGTTTGTAATGAGGTAACTAGTTGGAATAAGAAGTCCGCACTGAGCAAAGCTGCATTCAAATGAAAGCTGATCTGCTCAGCCATTGACAGTTTGTACGAGGTGGACATGTAAAGGTTTTCTTTCAAGAAAAATATTACAAGGCTTATCTTTTGTTCTCCATCCAATCAATATGTGACTGGTGAAGATAATAATGCATACATTAATAGACAGCTTATTGAAATTCTCTATTGTAGACAGTGACAAGCACTTGAGAAATGGTCCTAGTTAAAGTTTACTGTTTTCACAATGAAAGAAAATGTGATAAAATGTC

Fln Alignment:

sp_v1.1_unigene18761___MTESTGFQLGTVGAXXXXXXXXXXXXICNKALISTLGFSFATTLTSWHLLVTFCSLHIALWLKLFEHKPFDARAVMXXXXXXXXXXXXXXXXXGFNSVGFYQMTKLAIIPCTVLLETLFFQKDFSRKIQFSLVILLVGVGIATVTDXXXXXXXXXXXXLAIVTTCVAQIMTNTIQKRFKVSSTQLLYQSCPYQATTLFITGPFVDGLLTNENVFAFKYTPHVLIFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYILLHDPFSWRNILGILIAIVGMGLYSYFCVVDNQSKQSEPPAQLSQVKDGETEPLVILENGSNKGNDNVGPKGPIWASNKDLHA
A9NX31_______________MTESTGFQLGTVGALSLSVISSVSIVICNKALISTLGFNFATTLTSWHLLVTFCSLHIALWLKLFEHKPFDARAVMGFGILNGISIGLLNLCLGFNSVGFYQMTKLAIIPCTVLLETLFFKKDFSRKIQFSLVILLLGVGIATVTDLQLNLLGSVLSLLAIVTTCVAQIMTNTIQKRFKVSSTQLLYQSCPYQATTLFITGPFVDGLLTNQNVFAFKYTPHVLIFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYILLHDPFSWRNILGILIAIVGMGLYSYFCAVDSQSKQSEPPAQLSQVKDGETEPLIIIENGSNKGNDSVGPKGPIWASNKDLHA

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
168	80		20		0.995493
496		33		66	1.0
568		58	8		1.0
570		83	16		0.999991
573		75	25		1.0
576	75	8	16		0.99999
577		33	66		1.0
578	66	25	8		1.0
580	16	8		75	0.99999
583	80			20	0.999996
586	20			80	0.999996
587		20		80	0.999996
588			20	80	0.999996
590		20	80		0.999996
645		14		85	0.993533
653	85	14			0.993533
654		14		85	0.993533
1536	50	50			1.0
1797			50	50	1.0
1842	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain