SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18727

Length: 1547 nt

Origin of reads: Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18727

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] sp\|Q9FJ25.1\|GDL81_ARATH RecName: Full=GDSL esterase/lipase At5g41890 dbj\|BAB10664.1\| GDSL-motif lipase/hydrolase-like protein [Arabidopsis thaliana]	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	gdsl-motif lipase hydrolase family protein	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	0.0	64%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Lipase, GDSL	IPR001087	-	0.0	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQT0

Fln msg: your sequence is shorter than subject: 348 - 369

Fln protein: MRSCSLLNTLGIMMRHACNLLLLIMPAMAVVTNYSQLNNSYIGFIFGDSLVDAGNNDYIFTLSKADSPPYGIDFSPSGGRPTGRFTNGKTISDIIGQLLGAKSFSPPYLAPTSHGPTILGGVNYASGAAGILNDTGSLFIGRISLDTQINYFENTRGELVRMLGEKNAGEFLRKVIFSVTIGANDFLNNYLEPIVSIPERARISPDKFERIMIVQFRRQLLKLYSLGARKFIISAVGPIGCIPYDRVINLVPPGSCAESSNAYDSVLEILQNFGNHGFENADDPCCGDVIPPVPCSLRSNMCQDRSKYVFWDAYHPTEAANIIIAKQFLDGDQRFVYPINVRQLFLL*

Protein Length: 349

Fln nts: ATGGGGAGATACGCAACAAAATCCTTTTACCCTTTTGGATCTGCCCACAAAAGTCGCATGAGATATCAGAAGTCTGACAACAAATGAGGACTCCAGCTATTACTGTTCCATCCAATCAGTGACCTGATGGCTTTATACACTGCAACTTTCATGTATTATATGAGAAGCCCGAGCTGGGGTGATGAAGCGCAGCTCTGGTGAAGATACATAAAGAAAT_-_ATGAGGTCTTGCAGTTTGCTTAATACTCTCGGAATTATGATGCGCCATGCATGCAATCTGTTGCTGCTCATCATGCCTGCCATGGCAGTTGTGACTAATTACTCTCAGCTGAATAACAGCTACATTGGATTCATATTCGGCGATTCGCTTGTGGATGCGGGGAATAACGACTATATCTTCACGCTTTCCAAGGCAGATTCGCCTCCCTATGGGATTGATTTTTCACCATCGGGGGGACGTCCCACTGGGCGGTTTACCAATGGGAAAACAATCTCAGACATTATTGGCCAGCTTTTGGGAGCGAAGTCCTTCTCTCCGCCATATCTGGCTCCCACTTCTCACGGTCCCACCATCCTGGGAGGCGTGAACTATGCCTCTGGTGCAGCTGGAATTCTTAACGACACTGGCTCTCTCTTTATAGGACGGATCTCTCTAGATACACAGATTAACTACTTCGAGAATACAAGAGGAGAGCTGGTCAGAATGCTTGGTGAGAAAAATGCGGGGGAATTTCTCAGAAAGGTCATATTTTCAGTAACAATTGGTGCAAACGACTTTTTAAACAATTACCTGGAGCCTATAGTTTCCATTCCGGAGAGAGCAAGGATTTCTCCTGACAAGTTCGAAAGAATCATGATTGTCCAATTCCGTCGACAATTGCTGAAATTATACAGTCTAGGTGCTAGAAAATTCATAATTTCTGCAGTAGGACCGATTGGCTGCATTCCATATGATCGTGTCATTAATCTGGTACCGCCAGGTAGCTGTGCTGAATCCTCAAATGCCTATGATAGTGTTCTAGAAATCCTCCAAAATTTTGGAAACCATGGATTCGAGAATGCAGATGACCCTTGCTGTGGGGATGTGATACCACCAGTGCCATGTTCACTGCGGAGCAATATGTGCCAAGATCGATCCAAATATGTTTTCTGGGATGCATATCATCCTACTGAAGCTGCCAATATAATCATTGCCAAACAATTCCTTGATGGGGACCAACGCTTCGTCTATCCTATCAACGTTCGTCAACTGTTTCTTCTTTGA___ATATTGACTCTAGATCTTTCTTCCCAATGTATGTCATTGCCTAAAACAGTCTCTAGGAGAGATCCAAGGTTTCTTTGCTTCAATTAAACCATGACGATAGCTTGAATCTAAATTATGATGAAACAAAAATGGTGTAACTCTATATAACTATATTTGATTGACTGTTGCTTTGCTTAAAATTAAACTACGAGGATAGCTAGAATCAGAACTATGACAGGACGAACAAAGCTGTAAGCTTATATATATGATGCTTAATCAAATGTTTATTTTGTCTTAAACTAAACTA

Fln Alignment:

sp_v1.1_unigene18727___NSYIGFIFGDSLVDAGNNDYIFTLSKADSPPYGIDFSPSGGRPTGRFTNGKTISDIIGQLLGAKSFSPPYLAPTSHGPTILGGVNYASGAAGILNDTGSLFIGRISLDTQINYFENTRGELVRMLGEKNAGEFLRKVIFSVTIGANDFLNNYLEPIVSIPERARISPDKFERIMIVQFRRQLLKLYSLGARKFIISAVGPIGCIPYDRVINLVPPGSCAES------------------------------SNAYDSVLEILQNFGNHGFENADDPCC---GDVIPPVPCSLRSNMCQDRSKYVFWDAYHPTEAANIIIAKQFLDGDQRFVYPINVRQ
B8LQT0_______________NLAASFVFGDSLVDAGNNNYIFTLSKANIAPNGCDFKPSAGQPSGRYTNGRIIPDIIADELGQKIYAPPFLAPSAKGSAILHGVNYASGGSGILNSTGRIFVGRLSLEVQVNNFAETRKELIGMLGAEKTKELLGNSAFSVTMGANDFINNYLVPIASTIQRALVSPESFIDQIMTTYRVQLMRLYELGARKIIVANLGPIGCIPYERTLNRVEEDQCAAMPNELAKMFNKRLRPLILELNANCKGATFVYANTYDMVEDLIINYAKYGFVSSNVACCGRGGQFRGVIPCGPTSSECVDHGKYVFWDPYHPSEAANLVVAKRLLDGGPNDVFPVNVRK

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
592		85		14	0.993533
601	14			85	0.993533
607	85	14			0.993533
683	85		14		0.993533
693		14		85	0.993533
709		12		87	0.992554
723	12		87		0.992554
803			3	90	0.996531
811	42		57		1.0
1026		11		88	0.923564
1371	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain