SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18726

Length: 1590 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18726

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cysteine protease, putative n=1 Tax=Ricinus communis RepID=B9RHA4_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	cysteine protease	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Cysteine endopeptidases.	EC:3.4.22.-	-	0.0	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	0.0	79%
Blast2go	cysteine-type endopeptidase activity	GO:0004197	Molecular Function	0.0	79%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidase, cysteine peptidase active site	IPR000169	-	79%
Blast2go	Peptidase C1A, papain C-terminal	IPR000668	-	79%
Blast2go	Peptidase C1A, papain	IPR013128	-	79%
Blast2go	Proteinase inhibitor I29, cathepsin propeptide	IPR013201	-	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU42

Fln msg:

Fln protein: MDRVEMITGMLSLALLFIVPGITAHIQGASSDINGVLLNPIREVTDMDGEGIIDDLRRGLLNAEAHFAHFLKKFNKKYSGVEEHAYRFSIFKKNLRKALRHQKLDRDAIHGINKFSDLTEEEFHQRYLGLARTPLSLSQRTQPAPILPTDDLPSNFDWRELGAVTGVKNQGGCGSCWTFSTTGAMEGANYMKTGKLVSLSEQQLVDCDHECDSSEPDECDSGCNGGLMTTAYQYALKAGGLQREEDYPYTGTEGSCKFDKTKVAAMVANFSTVSIDEDQIAANIVQNGPLAVGINAEFMQTYVGGVSCPYICNKQNLNHGVLLVGYGAAGYAPGRFKEKPFWIIKNSWGPDWGEDGYYKLCRGHNICGINTMVSTVAAAIIPTDDDH*

Protein Length: 389

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATACTACAGGAAACA_-_ATGGATAGAGTTGAGATGATAACAGGGATGCTGTCCCTTGCCCTCTTATTCATAGTTCCGGGTATTACAGCCCACATCCAGGGGGCATCTTCTGATATAAATGGTGTTCTTCTGAATCCCATCCGTGAAGTGACCGACATGGATGGCGAGGGAATAATAGACGATCTGAGGCGAGGGCTGTTGAATGCAGAGGCCCATTTTGCTCATTTTCTGAAGAAATTCAATAAGAAATACTCTGGAGTGGAGGAACACGCCTATCGTTTCTCCATCTTCAAGAAGAATCTGCGCAAGGCTCTCAGGCACCAGAAGTTGGACCGTGACGCTATTCATGGCATCAACAAGTTTTCAGATCTGACAGAGGAGGAGTTCCATCAGCGGTACCTGGGTCTGGCTAGGACTCCACTCTCGCTCTCACAACGAACTCAACCCGCCCCAATACTGCCTACTGACGATTTACCCTCTAACTTTGACTGGAGAGAGCTTGGCGCTGTCACTGGTGTCAAGAATCAGGGCGGTTGTGGGTCTTGTTGGACTTTCAGCACGACTGGAGCAATGGAAGGAGCAAATTACATGAAAACAGGAAAGCTTGTGAGTCTAAGCGAGCAACAACTTGTGGATTGCGATCATGAGTGCGACTCTTCAGAGCCAGATGAGTGTGACTCGGGATGCAACGGTGGCCTAATGACAACTGCGTACCAGTATGCTCTCAAAGCTGGTGGATTGCAAAGGGAGGAAGATTATCCATACACAGGAACTGAGGGGTCCTGTAAGTTTGACAAGACCAAAGTTGCAGCCATGGTTGCCAACTTCAGCACAGTGTCAATCGATGAAGACCAAATTGCGGCCAATATTGTGCAGAATGGGCCTTTAGCTGTGGGTATCAATGCGGAATTCATGCAAACATATGTGGGCGGAGTATCTTGCCCTTACATTTGCAATAAACAAAATTTGAATCACGGAGTATTGCTGGTGGGATATGGTGCAGCGGGGTATGCCCCTGGCAGGTTCAAGGAGAAGCCATTCTGGATCATCAAGAATTCATGGGGCCCTGATTGGGGTGAAGATGGCTACTACAAATTGTGCAGAGGACACAATATTTGTGGAATAAACACCATGGTTTCCACTGTTGCAGCAGCCATTATTCCAACTGATGATGACCACTGA___CCATCTCTTTCTGGTTGAAATGTGTACATAATTGTTTTGGGTTAATGTTTTTTAAAATCTGATACCAGTTTTAAAAATCTAATTTGCAAGTAGCTCGGTGGTTTTTCAAAAGTGGTTTTTATTTAAAAATAAATAAAAAAATATGTATTATCAAATTTCCAGGAATTTTTTTTATATTTGTATTCCTTGGAAAATTATTAATGTTGGTGTCATTTGATTTGAAAATCCCTAATTATGATAGGGATACTGGTGGGCATAATTTATATATTTGTCAATGTTCATACATTCATCATCAATCAATTTGTGGATTATGGAGGACAAATTCCACATTTTCGTTTTTGGTGAATCTCTCTATTTAATTTAGAGCTGCATAGAGAAATCTCTTTA

Fln Alignment:

sp_v1.1_unigene18726___HSILQETMDRVEMITGMLSLALLFIVPGITAHIQGASSDINGVLLNPIREVTDMDGEGIIDDLRRGLLNAEAHFAHFLKKFNKKYSGVEEHAYRFSIFKKNLRKALRHQKLDRDAIHGINKFSDLTEEEFHQRYLGLARTPLSLSQRTQPAPILPTDDLPSNFDWRELGAVTGVKNQGGCGSCWTFSTTGAMEGANYMKTGKLVSLSEQQLVDCDHECDSSEPDECDSGCNGGLMTTAYQYALKAGGLQREEDYPYTGTEGSCKFDKTKVAAMVANFSTVSIDEDQIAANIVQNGPLAVGINAEFMQTYVGGVSCPYICNKQNLNHGVLLVGYGAAGYAPGRFKEKPFWIIKNSWGPDWGEDGYYKLCRGHNICGINTMVSTVAAAIIPTDD
A9NU42_______________HTVAKERMSSVEMITGILSLALLFLVPTITAHVHEASSDLNAVLPNPIREVTDMDGEGVIDDLRRGLLNAEAHFAHFVKKFNKEYSGAEEHARRFSIFKKNLHKALRHQKLDRDAIHGINKFSDLTEEEFHEQYLGLTTPPRSLSQRTQPAPILPTDDLPPDFDWRELGAVTPVKNQGACGSCWTFSTTGAMEGANFMKTGKLISLSEQQLVDCDHECDSSEPDVCDSGCNGGLMTTAYQYALKAGGLQREEDYPYTGIDGSCKFDNTKVAAMVANFSTVSIDEDQIAANLVKNGPLAVGINAAFMQTYVGGVSCPYVCNKQNLDHGVLLVGYGAAGYAPGRLKNKPFWIIKNSWGPDWGEDGYYKLCRGHNVCGINTMVSTVAAANIQTDD

SNPs (tot: 3)

Position	C %	G %	T %	Probability
73		67	32	1.0
103		33	66	1.0
1473	25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain