SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18723

Length: 1005 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18723

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alba domain containing protein	-	-	6.0e-10	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	protein	-	-	0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	89%
Blast2go	nucleus	GO:0005634	Cellular Component	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	89%

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
144			14	85	0.993533
271			15	84	0.999986
276	84		15		0.999986
432	97		2		0.903836
569		10	90		0.90298
809	10		90		0.999898
993	25		75		0.996473
994		75	25		0.996473
996	75	25			0.996473
1006	66	33			0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
633	645	GCT GCT GCT GCT G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain