SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18705

Length: 1864 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18705

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calcium-dependent protein kinase 1 n=3 Tax=Brassicaceae RepID=CDPK1_ARATH	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	calcium-dependent protein kinase	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Calcium/calmodulin-dependent protein kinase.	EC:2.7.11.17	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	88%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	88%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	88%
Blast2go	ATP binding	GO:0005524	Molecular Function	88%
Blast2go	protein binding	GO:0005515	Molecular Function	88%
Blast2go	calmodulin-dependent protein kinase activity	GO:0004683	Molecular Function	88%
Blast2go	peroxisome	GO:0005777	Cellular Component	88%
Blast2go	endoplasmic reticulum membrane	GO:0005789	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	88%
Blast2go	Calcium-binding EF-hand	IPR002048	-	88%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	88%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	88%
Blast2go	Protein kinase-like domain	IPR011009	-	88%
Blast2go	EF-hand-like domain	IPR011992	-	88%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	88%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	88%
Blast2go	EF-Hand 1, calcium-binding site	IPR018247	-	88%
Blast2go	EF-hand	IPR018248	-	88%
Blast2go	EF-HAND 2	IPR018249	-	88%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQ38

Fln msg: atg_distance in limit (1-15): atg_distance = 7, your sequence is shorter than subject: 494 - 529

Fln protein: MRRSNSTSVAPAGGGFSVLQRKTELLKNLYSVGRRLGQGQFGTTYLCIEKSTGKEYACKSIAKRKLTAEEDVEDVRREIQIMHHLAGHPNVVTIKGAYEDITSVHLVMELCAGGELFDRIVKRGHFSERKAADLTRTIVGVVEACHSLGVMHRDLKPENFLFSNKSEDSPLKSIDFGLSVFFKPGETFSDVVGSPYYVAPEVLRKHYGPEADVWSAGVILYILLSGVPPFWAETEQGIFEQVLQGQLDFSSEPWPAISESAKDLIRKMLVRNPKKRLKAHQVLCHPWIQKDGVAPDRPLDSAVLSRLKQFSAMNKIKKMALRVIAESMSEEEIAGLKEMFNMIDTDNSGSITFEELKEGLKRVGCDLMESEIHQLMEAADVDNNGTIDYREFVAATLHLNKVEREDHLFAAFAYFDKDSSGYITLDELQQACREFGIEDFQLEEMIREVDQDNDGTIDFNEFVAMMRKGNNIFGRITTRKSTSTELIGSLRYG*

Protein Length: 495

Fln nts: GACGGAAGAGGAGCCCGTGAAGCCTCCCGAACCGCAGCTTTCTTCCGTC_-_ATGAGACGAAGCAACAGCACCAGCGTGGCACCCGCTGGCGGCGGCTTTTCCGTTTTGCAGCGGAAAACGGAGCTCCTCAAGAATCTGTACTCGGTAGGTCGGCGGCTGGGCCAGGGCCAGTTCGGGACAACGTACCTGTGCATCGAGAAATCCACGGGGAAAGAGTACGCTTGCAAATCGATTGCCAAGCGGAAGCTGACGGCCGAGGAGGACGTGGAAGACGTCCGGCGAGAGATTCAGATAATGCACCACCTGGCCGGGCACCCCAACGTGGTGACCATCAAGGGCGCCTACGAGGACATAACCTCTGTGCATCTCGTCATGGAGCTCTGCGCCGGTGGCGAGCTCTTCGACCGGATTGTCAAGAGGGGCCACTTCAGTGAGCGCAAGGCCGCCGATTTGACCAGGACGATCGTCGGTGTCGTGGAGGCCTGTCACTCACTGGGAGTCATGCACCGGGACTTGAAGCCAGAGAATTTCTTGTTCTCCAACAAAAGCGAGGATTCCCCCCTCAAGAGCATAGATTTTGGGCTGTCCGTCTTCTTCAAACCAGGAGAGACATTTAGTGATGTAGTTGGTAGCCCTTATTATGTAGCTCCTGAGGTTCTGCGCAAACATTATGGTCCTGAAGCTGATGTATGGAGTGCTGGAGTCATTCTCTACATTCTACTGAGTGGAGTTCCTCCATTTTGGGCAGAAACCGAACAAGGGATCTTTGAGCAGGTCCTCCAGGGTCAACTTGATTTCTCATCAGAGCCATGGCCCGCGATTTCAGAAAGTGCCAAGGACTTAATTAGAAAGATGCTTGTTAGAAATCCTAAGAAGAGATTGAAAGCACACCAAGTTCTATGCCACCCTTGGATTCAAAAGGATGGTGTTGCTCCAGACAGACCTCTTGATTCTGCAGTGTTATCTCGATTGAAGCAATTTTCTGCAATGAACAAGATTAAAAAGATGGCTTTGCGGGTTATAGCTGAAAGCATGTCGGAAGAGGAGATTGCTGGTCTAAAGGAGATGTTCAATATGATAGATACAGATAACAGTGGCTCAATCACCTTCGAAGAACTCAAGGAGGGTCTAAAAAGAGTTGGGTGTGATCTCATGGAGTCGGAGATTCACCAACTCATGGAGGCGGCTGATGTAGACAATAATGGTACCATAGACTATCGAGAATTTGTTGCAGCTACTTTGCATCTAAACAAGGTTGAACGTGAGGACCATTTATTTGCTGCCTTTGCGTACTTTGATAAAGATTCAAGTGGATATATTACTCTTGATGAACTACAACAAGCATGCCGTGAATTTGGTATTGAGGACTTTCAGCTTGAAGAAATGATCCGAGAAGTGGACCAAGATAATGATGGGACTATTGATTTCAATGAATTTGTAGCAATGATGCGGAAAGGGAATAACATTTTTGGGAGAATAACCACACGAAAAAGTACAAGTACTGAATTAATAGGTTCACTGAGATATGGTTAA___ATTTCACCAAGGAGCCCTTTGTTGTCATTTTGACATATATTTGTACCGAGCTCCATGTAATTAGTTATCATGCAAAATTTCCCACAATAGTTATTTCTCTGTATTTCACACAAGTGATAGGAAGTGATGTTTCCCTTTGTTGAATGTAAAGTTTTATTGTTATGTTGAACATGTCAGTTCAATTTTCCCTTGATACAATAAAGAGATGCTGAATATTCATGAATTGACTGCATTCCACTTACAACATTCCCTTGTGGCTGCAGTGTTCTGCCTTTCATTGTACTTTGGGCTTGAAGGATTTATTTATAAACCAGTGGACCGATAAAATTGTAG

Fln Alignment:

sp_v1.1_unigene18705___YSVGRRLGQGQFGTTYLCIEKSTGKEYACKSIAKRKLTAEEDVEDVRREIQIMHHLAGHPNVVTIKGAYEDITSVHLVMELCAGGELFDRIVKRGHFSERKAADLTRTIVGVVEACHSLGVMHRDLKPENFLFSNKSEDSPLKSIDFGLSVFFKPGETFSDVVGSPYYVAPEVLRKHYGPEADVWSAGVILYILLSGVPPFWAETEQGIFEQVLQGQLDFSSEPWPAISESAKDLIRKMLVRNPKKRLKAHQVLCHPWIQKDGVAPDRPLDSAVLSRLKQFSAMNKIKKMALRVIAESMSEEEIAGLKEMFNMIDTDNSGSITFEELKEGLKRVGCDLMESEIHQLMEAADVDNNGTIDYREFVAATLHLNKVEREDHLFAAFAYFDKDSSGYITLDELQQA-CREFGIEDFQ-LEEMIREVDQDNDGTIDFNEFVAMMRKGNN
C0PQ38_______________FLLDRELGRGEFGITYLCTDRESRELLACKSISKRKLKTAIDIEDVRREVAIMKHLPKNNNIVSLKATCEDDNAVHLLMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSVFFKPGDRFSEIVGSPYYMAPEVLKRNYGPEIDVWSAGVILYILLCGVPPFWAESEQGVAQAILRGFVDFKREPWPKISETAKSLVRQMLEPDPKRRLTAQQVIEHPWLQNAKKAPNVPLGDVVKTRLKQFSMTNKFKKRALRVIADHLSVEETKGIKDMFKMMDTDNSGSISYDKLKAGLHKLGSQMDESEVQILMDAADADGNGMLDYREFVAASLHMQSIDNDDYLRKAFLFFDKDGSGYIEIEEFREALADDFGPNDIDVVNSIFNEVDADKDGRISYEEFASMMKTGTD

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
924	20		80		0.995493
1413		7		92	0.999532
1415	92			7	0.999532
1416		7		92	0.999532
1418			92	7	0.999532
1422		7		92	0.999532
1423	92			7	0.999532
1425			7	92	0.999602
1427	92	7			0.999602
1429			7	92	0.999664
1433	92	8			0.999718
1436	92	8			0.999718
1491	88			4	0.999262

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain