SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18699

Length: 974 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18699

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-directed RNA polymerase II subunit J n=3 Tax=Andropogoneae RepID=B4FJS1_MAIZE	-	-	1.99993e-41	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	protein	-	-	0.0	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed RNA polymerase.	EC:2.7.7.6	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	89%
Blast2go	Pyrimidine metabolism	00240	89%
Blast2go	Metabolic pathways	01100	89%

Source	GOs	Term	Type	Identity
Blast2go	cellular transcription, DNA-dependent	GO:0006350	Biological Process	89%
Blast2go	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	89%
Blast2go	DNA binding	GO:0003677	Molecular Function	89%
Blast2go	protein dimerization activity	GO:0046983	Molecular Function	89%
Blast2go	DNA-directed RNA polymerase II, core complex	GO:0005665	Cellular Component	89%
Blast2go	DNA-directed RNA polymerase IV complex	GO:0000418	Cellular Component	89%
Blast2go	DNA-directed RNA polymerase V complex	GO:0080137	Cellular Component	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Blast2go	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	IPR008193	-	89%
Blast2go	DNA-directed RNA polymerase, RBP11-like	IPR009025	-	89%
Blast2go	DNA-directed RNA polymerase, dimerisation	IPR011261	-	89%

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
407	83		16		0.994512
410		16		83	0.994512
416		16		83	0.994512
421	83		16		0.994512
422		16		83	0.994512
423	83			16	0.994512
424	83		16		0.994512
425	83			16	0.994512
426		16	83		0.994512
428		16	83		0.994512
510		85		14	0.993533
525		85		14	0.993533
628	50		50		1.0
698		86		13	1.0
699	16		83		1.0
713		26		73	1.0
732	10		89		0.999919
737	20		80		1.0
771		80		20	0.995493
779	80		20		0.995493
816		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain