SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18697

Length: 719 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene18697 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome c n=1 Tax=Ginkgo biloba RepID=CYC_GINBI	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	protein	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	90%
Blast2go	electron transport chain	GO:0022900	Biological Process	90%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	90%
Blast2go	heme binding	GO:0020037	Molecular Function	90%
Blast2go	respiratory chain	GO:0070469	Cellular Component	90%
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Blast2go	Cytochrome c, class IA/ IB	IPR002327	-	90%
Blast2go	Cytochrome c, class I	IPR003088	-	90%
Blast2go	Cytochrome c domain	IPR009056	-	90%

Full-Lengther Next Prediction

SNPs (tot: 55)

Position	A %	C %	G %	T %	Probability
112		80		20	0.995493
176	80	20			0.995493
286	11			88	0.999952
290		12		87	0.999964
291	12			87	0.999964
295		12		87	0.999964
296	12		87		0.999964
299	87		12		0.999964
305	87		12		0.999964
426	16			83	0.999991
427	16			83	0.999991
429			18	81	0.999994
431		18		81	0.999994
432	18			81	0.999994
433		18		81	0.999994
435	16			83	0.999991
436		16		83	0.999991
441			80	20	0.999996
442		80	20		0.999996
446	80		20		0.999996
448		20		80	0.999996
451	80	20			0.999996
452		20	80		0.999996
454	90			10	0.90298
455			30	70	1.0
456	80		20		0.999996
458	10	90			0.90298
459	20	80			0.999996
460	10	20		70	0.999998
462	20	80			0.999996
463	70	30			1.0
464	10		90		0.90298
465	12			87	0.992554
466			12	87	0.992554
471	12	87			0.992554
472	87	12			0.992554
476		12		87	0.992554
503		14	85		0.993533
504		14	85		0.993533
507	20	80			0.995493
563	75	25			0.996473
564	75	25			0.996473
565		25	75		0.996473
592	33			66	0.997452
598	66		33		0.997452
622		33		66	0.997452
623		33		66	0.997452
624	66	33			0.997452
631		33		66	0.997452
634	66	33			0.997452
638			33	66	0.997452
644		33		66	0.997452
645		33	66		0.997452
650	66	33			0.997452
651			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain