SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18692

Length: 1949 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene18692
ATGGGGACGATAAAAGGATCCACGTCGTGACAAAGCTGAAACTATTCCATCCCCCATTTCACTACCCTGCTCCCGATACCTTTCGTCACATAAATCCTACTCCGTTAAGGCGGGTCCTTAAAGCTGTGTAACATTCGTAGCGCCCCTTTCTGTACTTTGTTTCTGCTCCTCCTGGCGCAGCCGCATCGTCTCGGTTCGAATCCTGTCGTGTGTGAAAATGGCCACGCCAATGAGTGAAGAAGACAGTATTTTCGAAGGCGAGGACGAGCTTTCTTCGATGACCACCGAAGAGCTTATTAGAGGAGCTCGCCTGCTCGAGAATGAGATTCGCATTCTCAAGGATGAAGTGCACAGGACAACACTAGACTTAGATGGCACGAAAGAGAAAATAAAGGAGAACCAAGAGAAGATCAAATTGAACAAGCAACTTCCTTATTTGGTTGGAAATATCGTCGAGATCTTAGAGATGAACCCCGAGGAGGAGGCAGAGGAAGATGGTGCAAATATTGATTTGGACTCACAAAGAAAGGGAAAATGTGTAGTGTTGAAGACATCGACACGGCAAACAATATTTTTGCCTGTGGTAGGGCTTGTAGATCCAGATAAACTGAAACCTGGGGATCTAGTGGGAGTGAATAAAGACAGTTATTTAATACTTGACACACTCCCATCAGAATATGATTCTCGTGTGAAGGCTATGGAAGTAGATGAAAAGCCAACGGAGGATTACAATGACATAGGAGGCCTTGAAAAGCAGATTACAGAGTTGGTTGAGGCCATTGTCTTGCCAATGACTCACAAGGAGAGGTTTCAAAAACTTGGTATTCGCCCACCGAAAGGGGTACTACTTTATGGGCCTCCAGGAACAGGAAAAACACTCATGGCTCGTGCATGTGCTGCACAAACAAATGCAACATTTTTAAAACTTGCTGGTCCACAATTAGTCCAGATGTTCATCGGGGATGGTGCCAAACTCGTTCGCGATGCTTTTCAACTTGCAAAGGAGAAAGCCCCATGTATTATCTTTATAGACGAGGTTGATGCAATTGGAACGAAGCGTTTTGACAGCGAAGTAAGTGGAGATAGAGAAGTGCAACGCACTATGCTTGAGTTACTGAATCAGCTTGATGGATTTAGCAGTGATGAACGTATAAAGGTCATAGCAGCAACAAATCGTGCAGATATTTTAGATCCGGCTTTAATGCGTTCAGGCCGTCTAGACAGAAAGATAGAATTCCCTCACCCAACAGAGGATGCACGGGCACGGATTTTACAGATTCATTCAAGAAAAATGACTGTTCATCCAGATGTCAACTTTGAAGAGCTTGCACGTTCCACTGATGATTTTAATGGTGCACAGTTAAAAGCTGTTTGTGTAGAAGCTGGTATGCTTGCTCTGCGTCGAGATGCAACTGAGGTTACCCATGAAGATTTCAATGAAGGAATAATTCAAGTTCAAGCCAAGAAGAAGTCCAGCTTGAATTACTACGCATAGACATGCTTTTCGTTGAATCAGAATTTGCTACTTGGTTCTGTGTTGTGATGAATACATATATAATTTAACTTTTGAGTTTCCCTGAGCATCATCTGCCGTTCATTATGTAACCAAGGTAGGATTAGGGTATGTGCTACTTATCATAAATAGATAGAATGGCTGTTGAAATATAAAACCAAGGTATGGTTAATTTGTAAATGCCATTGATACTATTTTTTAACAATGCAATTTATGAGCTTTGCCTCTGGTTGAAAAGGGCGAGTTCTCTGCATTGCAAATATATGGACAGTTCCTAGTTTGGCTTTTGGTGGATGCGTTTTTCTTGACACGTTTAAGCAGCGTATTGTACTCAAAAAATCCATATGCAGCAAGAGGCATGGTTAAGAGCAAAAGCAAGGGCTTTAACTGTGGTTCTAATCCATTTGTGTGGCGTTCGCAGTGAGTGACAGGCCAC

Ace file of the UniGene sp_v1.1_unigene18692

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	26S protease regulatory subunit 6A homolog A n=4 Tax=rosids RepID=PS6AA_ARATH	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	26s proteasome aaa-atpase subunit rpt5a	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	96%
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	96%
Blast2go	proteasomal protein catabolic process	GO:0010498	Biological Process	96%
Blast2go	embryo sac development	GO:0009553	Biological Process	96%
Blast2go	pollen development	GO:0009555	Biological Process	96%
Blast2go	peptidase activity	GO:0008233	Molecular Function	96%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	96%
Blast2go	ATP binding	GO:0005524	Molecular Function	96%
Blast2go	ATPase activity	GO:0016887	Molecular Function	96%
Blast2go	proteasome regulatory particle, base subcomplex	GO:0008540	Cellular Component	96%
Blast2go	cytoplasm	GO:0005737	Cellular Component	96%
Blast2go	nucleus	GO:0005634	Cellular Component	96%

Source	InterPros	Term	Type	Identity
Blast2go	AAA+ ATPase domain	IPR003593	-	96%
Blast2go	ATPase, AAA-type, core	IPR003959	-	96%
Blast2go	ATPase, AAA-type, conserved site	IPR003960	-	96%
Blast2go	26S proteasome subunit P45	IPR005937	-	96%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX40

Fln msg:

Fln protein: MATPMSEEDSIFEGEDELSSMTTEELIRGARLLENEIRILKDEVHRTTLDLDGTKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEEEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQITELVEAIVLPMTHKERFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEVDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEDARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKKKSSLNYYA*

Protein Length: 427

Fln nts: ATGGGGACGATAAAAGGATCCACGTCGTGACAAAGCTGAAACTATTCCATCCCCCATTTCACTACCCTGCTCCCGATACCTTTCGTCACATAAATCCTACTCCGTTAAGGCGGGTCCTTAAAGCTGTGTAACATTCGTAGCGCCCCTTTCTGTACTTTGTTTCTGCTCCTCCTGGCGCAGCCGCATCGTCTCGGTTCGAATCCTGTCGTGTGTGAAA_-_ATGGCCACGCCAATGAGTGAAGAAGACAGTATTTTCGAAGGCGAGGACGAGCTTTCTTCGATGACCACCGAAGAGCTTATTAGAGGAGCTCGCCTGCTCGAGAATGAGATTCGCATTCTCAAGGATGAAGTGCACAGGACAACACTAGACTTAGATGGCACGAAAGAGAAAATAAAGGAGAACCAAGAGAAGATCAAATTGAACAAGCAACTTCCTTATTTGGTTGGAAATATCGTCGAGATCTTAGAGATGAACCCCGAGGAGGAGGCAGAGGAAGATGGTGCAAATATTGATTTGGACTCACAAAGAAAGGGAAAATGTGTAGTGTTGAAGACATCGACACGGCAAACAATATTTTTGCCTGTGGTAGGGCTTGTAGATCCAGATAAACTGAAACCTGGGGATCTAGTGGGAGTGAATAAAGACAGTTATTTAATACTTGACACACTCCCATCAGAATATGATTCTCGTGTGAAGGCTATGGAAGTAGATGAAAAGCCAACGGAGGATTACAATGACATAGGAGGCCTTGAAAAGCAGATTACAGAGTTGGTTGAGGCCATTGTCTTGCCAATGACTCACAAGGAGAGGTTTCAAAAACTTGGTATTCGCCCACCGAAAGGGGTACTACTTTATGGGCCTCCAGGAACAGGAAAAACACTCATGGCTCGTGCATGTGCTGCACAAACAAATGCAACATTTTTAAAACTTGCTGGTCCACAATTAGTCCAGATGTTCATCGGGGATGGTGCCAAACTCGTTCGCGATGCTTTTCAACTTGCAAAGGAGAAAGCCCCATGTATTATCTTTATAGACGAGGTTGATGCAATTGGAACGAAGCGTTTTGACAGCGAAGTAAGTGGAGATAGAGAAGTGCAACGCACTATGCTTGAGTTACTGAATCAGCTTGATGGATTTAGCAGTGATGAACGTATAAAGGTCATAGCAGCAACAAATCGTGCAGATATTTTAGATCCGGCTTTAATGCGTTCAGGCCGTCTAGACAGAAAGATAGAATTCCCTCACCCAACAGAGGATGCACGGGCACGGATTTTACAGATTCATTCAAGAAAAATGACTGTTCATCCAGATGTCAACTTTGAAGAGCTTGCACGTTCCACTGATGATTTTAATGGTGCACAGTTAAAAGCTGTTTGTGTAGAAGCTGGTATGCTTGCTCTGCGTCGAGATGCAACTGAGGTTACCCATGAAGATTTCAATGAAGGAATAATTCAAGTTCAAGCCAAGAAGAAGTCCAGCTTGAATTACTACGCATAG___ACATGCTTTTCGTTGAATCAGAATTTGCTACTTGGTTCTGTGTTGTGATGAATACATATATAATTTAACTTTTGAGTTTCCCTGAGCATCATCTGCCGTTCATTATGTAACCAAGGTAGGATTAGGGTATGTGCTACTTATCATAAATAGATAGAATGGCTGTTGAAATATAAAACCAAGGTATGGTTAATTTGTAAATGCCATTGATACTATTTTTTAACAATGCAATTTATGAGCTTTGCCTCTGGTTGAAAAGGGCGAGTTCTCTGCATTGCAAATATATGGACAGTTCCTAGTTTGGCTTTTGGTGGATGCGTTTTTCTTGACACGTTTAAGCAGCGTATTGTACTCAAAAAATCCATATGCAGCAAGAGGCATGGTTAAGAGCAAAAGCAAGGGCTTTAACTGTGGTTCTAATCCATTTGTGTGGCGTTCGCAGTGAGTGACAGGCCAC

Fln Alignment:

sp_v1.1_unigene18692___MATPMSEEDSIFEGEDELSSMTTEELIRGARLLENEIRILKDEVHRTTLDLDGTXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEEEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQITELVEAIVLPMTHKERFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEVDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEDARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKKKSSLNYYA
A9NX40_______________MATAMTE-DSIFEGEDELSSMTTEELTRGARMLESENRVLRDEAQRTNLELDTTKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEEEAEEDGANVDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQITELVEAIVLPMTHKERFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKDKSPCIIFIDEVDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEDARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKKKSSLNYYA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
377		87		12	0.992554
506		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain