SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18687

Length: 1427 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18687

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	voltage-dependent anion-selective channel, putative; K05862 voltage-dependent anion channel	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	porin voltage-dependent anion-selective channel protein	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	anion transport	GO:0006820	Biological Process	80%
Blast2go	transmembrane transport	GO:0055085	Biological Process	80%
Blast2go	voltage-gated anion channel activity	GO:0008308	Molecular Function	80%
Blast2go	mitochondrial outer membrane	GO:0005741	Cellular Component	80%
Blast2go	pore complex	GO:0046930	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Porin, eukaryotic type	IPR001925	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRG5

Fln msg:

Fln protein: MGKGPGLFSDIGKKAKDLLTKDYNYDQKFTVTTFSETGLAFTSTGVKKGELFSGDLNTQYKYQNAIVDVKIDTNSNILTTITLDQPIPHAKTIFSFKIPDQKSGKVDLQYFHDHVGLSSSIGLTPTPIVEVSGALGHDEISVGGEMAFDTASGTFLKYNAGIGLSKPEYTAAVILADKGDTVKASYTHIVNPISKTAVAAEFTHKFSTNENTYTVGSSHAIDRLTTMKSRLDNRGKLGALIQHEWRPKSLVTISGEFDTKALDKSAKIGLSLALKP*

Protein Length: 278

Fln nts: CGTCACTTAACAGCACGCGATTTTCCACAATTACGTCTATAAACGTAATGTTAACTTACGGGCTAGTAATATCTGTGCTTATGAGATGCCATTACACCCTAAATAAATGTATGTATGATATGGTATGTATGGTATCCTGTACTCGATTCTGTCGAGCGAAGGTTACCCTCCCGTGAGGCGAAGTCTGCAGTTGCAGTGCGTTTTCCTTCATCCTTGGAGCATCCTCGGAAGAAGGATATCTAACAGTCTTTAGTAGAG_-_ATGGGCAAGGGACCTGGACTCTTTTCAGACATTGGAAAGAAGGCTAAGGATCTTCTCACAAAGGACTACAATTATGATCAAAAATTTACTGTGACTACATTCAGCGAGACTGGACTGGCATTTACATCGACTGGTGTAAAGAAAGGGGAACTGTTTTCTGGAGATCTCAACACACAGTACAAATATCAAAATGCAATCGTGGATGTGAAAATTGATACGAATTCTAACATCTTAACAACAATCACTCTTGATCAACCCATTCCACATGCAAAGACTATTTTCAGCTTCAAAATACCAGATCAGAAGTCCGGCAAGGTGGACTTGCAGTACTTTCATGATCATGTGGGATTAAGCTCAAGCATTGGTTTGACACCTACTCCCATTGTTGAGGTCTCTGGTGCACTTGGTCATGATGAAATTTCAGTTGGTGGTGAGATGGCCTTTGACACTGCATCAGGCACATTTTTAAAGTACAATGCAGGCATTGGTCTTTCAAAGCCTGAGTACACTGCAGCTGTGATACTGGCTGATAAGGGGGACACTGTGAAGGCCTCATATACACATATAGTGAATCCTATTTCAAAGACTGCAGTTGCGGCTGAATTCACCCACAAGTTTTCGACAAATGAGAACACTTATACAGTTGGGAGTTCACATGCTATTGATCGTCTTACCACAATGAAATCACGACTTGACAATCGTGGGAAACTTGGTGCTCTTATCCAACACGAGTGGAGGCCTAAATCACTAGTAACAATTTCTGGAGAATTTGACACCAAGGCTCTTGATAAGAGTGCCAAAATTGGTTTGTCATTGGCATTAAAGCCTTGA___GATAATCTAGTCAGAAATTTAAGTTTAGCCTGTTTTGATTCTTCTTGGATGTGATCTAATATTTTTTTTTGAAGTAATCTGGAGGCAGAATGCAGGCATTGACTATTTCTCAAATTCTGAAGAGATTTAAACCTGCTGCCATGCATTCTGTAACTGGGCAACTAGTCGGTTGAATAATTTATTCATGGAAGCTTGTGGCAATAATAGTGTTTCTCTTCAACTGTTATTTTTGATCTCCCATGGAAACCGTTAGCATGAGTAATATTCCCTATTGTTTGTTAATTTTCCCTGCCCTCAAGCAACATGTTGAGATCTTTTATATGGTATCATTTTTAAAA

Fln Alignment:

sp_v1.1_unigene18687___MGKGPGLFSDIGKKAKDLLTKDYNYDQKFTVTTFSETGLAFTSTGVKKGELFSGDLNTQYKYQNAIVDVKIDTNSNILTTITLDQPIPHAKTIFSFKIPDQKSGKVDLQYFHDHVGLSSSIGLTPTPIVEVSGALGHDEISVGGEMAFDTASGTFLKYNAGIGLSKPEYTAAVILADKGDTVKASYTHIVNPISKTAVAAEFTHKFSTNENTYTVGSSHAIDRLTTMKSRLDNRGKLGALIQHEWRPKSLVTISGEFDTKALDKSAKIGLSLALKP
A9NRG5_______________MGKGPGLFSEIGKKAKDLLTRDYNYDQKFTVTTFSETGLAFTSTGVKKGELFSGDLNTQYKYQNATVDVKIDTNSNILTTITLDQPIPNAKTIFSFKIPDQKSGKVDLQYFHDHVGLSSSIGLTPTPIVEVSGALGSDGISVGGEMAFDTASSTFSKYSAGIGVSKPEYTAAVILADKGDTVKASYTHIVNPITKTAVAAEFTHKFSTNENTYTVGSSHAIDRLTTMKSRLDNRGKLAALIQHEWRPKSLVTISGEFDTKALDKSAKIGLSLALKP

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
110			37	56	1.0
112			43	56	1.0
492	92			8	0.999718
495			7	92	0.999602
498	92			7	0.999602
948		2		97	0.910981
951		97		2	0.999789
964		1	94		0.999999
965	3			96	0.999836
967			97	2	0.921055
968		2	97		0.921055
1156	11			44	1.0
1175			82	17	1.0
1318		7	3	85	0.997433
1319	4	8		87	0.999414
1321	11	5		77	0.999842
1322	11			88	0.999952
1323	11			88	0.999952

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain