SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18675

Length: 1811 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18675

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative methyl-binding domain protein n=1 Tax=Cryptomeria japonica RepID=Q1XG62_CRYJA	-	-	1.96182e-44	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	methyl-binding domain protein	-	-	0.0	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	methyl-CpG binding	GO:0008327	Molecular Function	0.0	78%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Methyl-CpG DNA binding	IPR001739	-	0.0	78%
Blast2go	DNA-binding, integrase-type	IPR016177	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRS8

Fln msg: your sequence is longer than subject: 376 - 345

Fln protein: MIPHAKCSEENTQLVARIRREVGASAIRTRNMSSPAEKEQQHAEKEPEMEAQPDSVEVVSVELPAPPGWKKQFIPKKGGTPKRNEIIFIAPTGEEIKNKRHLSQYLKAHPGGPDITEFEWGTGDTPRRSARLSEKPKTTETPESESKKTTPKRSRKSEGASENAKEKKKKGAEAPSQELEAGKEEEMQDVENVEDSAKGKTSASETAEDVGKDEKDDEKEKPAMKAEEQQEDNEEKPESEPDVMTDGPKSDEAVEVAVDKGEETPLKDPKVQEVEGAGTEKTEVKQKEETQEEHHGGDGKPEEITTAVPVESLEAKEENKCAGSYVDNSKNGEPVEQMEVAREPNEKHASQENAQLREINSLRCEQLPEPSSVSC*

Protein Length: 377

Fln nts: CGCAGTTTAATGTGTCTACATGTTGACCTTTCATTTCGACTCGACAGTCA_-_ATGATTCCTCACGCGAAGTGTAGTGAAGAGAACACGCAATTGGTGGCCAGAATACGAAGAGAAGTTGGAGCTTCTGCGATTCGAACTCGCAACATGTCTAGCCCAGCCGAGAAGGAGCAGCAGCATGCTGAGAAGGAACCCGAGATGGAAGCACAACCAGACTCCGTTGAAGTTGTTTCCGTCGAGCTTCCAGCTCCCCCAGGATGGAAGAAACAGTTTATTCCCAAGAAAGGGGGGACCCCAAAGAGGAATGAGATTATTTTCATTGCTCCTACAGGTGAGGAGATCAAGAATAAGCGGCATCTGTCGCAGTACTTGAAAGCCCATCCAGGAGGTCCTGATATTACGGAATTTGAGTGGGGCACAGGTGATACACCAAGGAGATCTGCAAGATTAAGTGAGAAGCCAAAAACAACCGAAACCCCAGAAAGTGAGTCTAAAAAGACAACTCCAAAGCGATCTAGGAAATCAGAGGGCGCTTCTGAAAATGCAAAAGAAAAGAAAAAGAAAGGAGCTGAAGCCCCTTCTCAAGAACTTGAAGCTGGAAAGGAAGAAGAAATGCAAGATGTTGAGAATGTGGAGGATTCAGCTAAAGGAAAAACTTCTGCTTCAGAAACGGCGGAAGATGTTGGAAAAGATGAGAAGGATGACGAGAAAGAGAAACCAGCAATGAAGGCTGAAGAGCAACAAGAAGACAATGAAGAGAAACCAGAATCAGAACCTGATGTGATGACTGATGGACCTAAATCTGATGAAGCAGTGGAGGTGGCTGTTGACAAAGGAGAAGAAACACCATTGAAGGATCCGAAAGTTCAGGAGGTGGAAGGGGCAGGAACTGAGAAGACAGAAGTGAAACAGAAAGAAGAAACGCAAGAAGAGCACCATGGTGGGGATGGCAAACCTGAGGAGATAACAACTGCGGTGCCAGTAGAATCACTGGAGGCAAAGGAGGAGAATAAATGTGCTGGATCTTATGTTGACAACTCTAAGAACGGGGAACCTGTAGAGCAAATGGAAGTAGCACGTGAACCTAATGAAAAGCATGCTAGTCAAGAGAATGCACAGCTACGAGAGATTAATTCTCTGCGATGCGAGCAGCTCCCTGAACCATCTTCAGTGAGCTGCTGA___ATCCCATCGTTTCTCCGCTGTGTATTGTTATAGTTTAGTACATGATTCATCGTTAGCCGTGCTTCAGGTTTGGGGTTTTGTGTAGGTAATAAATTCTTACAAAGGTCTTTTTAGCATTGCAATGCGGTAGCAATGCCACATCTCAAATCTAAACAACGGAACCTGGGGATGCAGTTTGTCTGTTGACATTGCAGACTCACCTAAATCAGAGCTTTTCGAAGCATGCACTTTGCATTTCTGATACAATTCGATTTCTAACTTTGTAAGTTTATTCTGCTAATGCTGTTATTCGACCATGTAATCGATGGGCTTTGGTGCCCTCCAAAGACTTATCTGCGCTGTAACTTGTTTAAATTGGGTAGTTTTGACAGCCTTTACTTTTATGGAACTTTTGAGTGTCTTCTGCAGAGCAGGTTTGAGGAAGTCAAATTCGTTTTTGCTCTGAAATTCTGAAGCCTTTCAGGACATGCAATATAGGCAAGTTGCTCAATGACTCACGGACCTGCTGATGTAGTGTTGTCTATTGCTATTCCGTTTTGTTCCAAGTCAACTCAGTCCATGTTACACTGGTAGAGGAATACCTCTATTAATGTTACTAAGACAACATTGCAAATTTTTAAACACACATGCAAT

Fln Alignment:

sp_v1.1_unigene18675___MSSPAEKEQ-QHAEKEPEMEAQPDSVEVVSVELPAPPGWKKQFIPKKGGTPKRNEIIFIAPTGEEIKNKRHLSQYLKAHPGGPDITEFEWGTGDTPRRSARLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSQELEAGKEEEMQDVENVEDSAKGKTSASETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMTDGPKSDEAVEVAVDKGEETPLKDPKVQEVEGAGXXXXXXXXXXXXXXXHHGGDGKPEEITTAVPVESLEAKEENKCAGSYVDNSKNGEPVEQMEVAREPNEKHASQENAQLREINSLRCEQLPEPSSVSC
C0PRS8_______________MASPTEKEQLQHTEKDPETETQPDSAEVVSVELPAPPGWKKQFLPKKGGTPKRNEIIFIAPTGEEIKNRRQLSQYLKAHPGGPDITEFEWGTGDTPRRSARLSEKPKTTETPESESKRTTPKRSRKSEGASENAKEKKKKGAESPSEEVEAGKEEEMQDVENVDDSAKGKTSASETTEDVGKDRQDDKEEKPEIKPEEKQEDNGEEPESEPDVKTDGPKSDEAVEAAVDKGEETPLKDPEVQEVEEAGTEQTEVKQKAEKQEEHHGGDDKPEEITIVVPGESLGGKEENKCAGANVDNSKNGEPVEQKEVAHEPNEKHASQENAQLREINSLRCEQLPEPSSVSC

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
48		66		33	0.997452
49	66		33		0.997452
51			33	66	0.997452
52		66	33		0.997452
57		46	46		1.0
58	57		42		1.0
59			42	57	1.0
60			35	64	1.0
61		85	14		0.999981
62	16	70	12		1.0
63			8	91	0.999766
65		75	16	4	1.0
66	83		12	4	1.0
67		91	8		0.999766
106	94		5		0.999995
107	94		5		0.999995
108			5	94	0.999995
163	41	58			1.0
302	85		14		0.993533
1044		87		12	0.992554
1059		12		87	0.992554
1077	87		12		0.992554
1083		12		87	0.992554
1234	80		20		0.999996
1239			20	80	0.999996
1243		90		10	0.90298
1244			90	10	0.90298
1254		16		83	0.994512
1256		20		80	0.995493
1257	20		80		0.995493
1578			20	80	0.995493
1579			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain