SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18671

Length: 922 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18671

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HLH domain containing protein	-	-	7.0e-05	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	89%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	89%
Blast2go	nucleus	GO:0005634	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Helix-loop-helix DNA-binding domain	IPR001092	-	0.0	89%
Blast2go	Helix-loop-helix DNA-binding	IPR011598	-	0.0	89%

Full-Lengther Next Prediction

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
385		12	87		0.999964
435	45		54		1.0
443	90			10	0.90298
445	10			90	0.90298
492	25		75		0.996473
496	50	50			1.0
498			75	25	0.996473
587			87	12	0.999964
589	81		12	6	0.999943
607	18		81		1.0
635	80		20		1.0
639		85		14	0.999981
654	14			85	0.999981
669			20	80	1.0
672		46		53	1.0
683	20		80		1.0
693	78	21			1.0
710		66		33	1.0
712		33		66	1.0
723	72		27		1.0
731	63		36		1.0
757	66		33		1.0
760		66		33	1.0
775	14		85		0.993533
776			14	85	0.993533
777	71			28	1.0
778	14		85		0.993533
786	14			85	0.993533
788	14			85	0.993533
789			14	85	0.993533
790		66	33		1.0
864		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain