SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18669

Length: 810 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18669

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Snrnp sm protein, putative n=6 Tax=Embryophyta RepID=B9T2G3_RICCO	-	-	6.02558e-44	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	protein	-	-	0.0	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	95%
Blast2go	small nucleolar ribonucleoprotein complex	GO:0005732	Cellular Component	0.0	95%

Source	InterPros	Term	Type	Identity
Blast2go	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	95%
Blast2go	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	95%
Blast2go	Like-Sm ribonucleoprotein (LSM)-related domain	IPR010920	-	95%

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
57		66	33		0.997452
58	66		33		0.997452
59			33	66	0.997452
60			33	66	0.997452
64	60		40		1.0
65	60		40		1.0
68		60	40		1.0
148	13		86		1.0
149		2		91	0.993509
150			16	83	1.0
363		4		95	0.995482
366		4	95		0.995881
367	95		4		0.995881
368	95			4	0.995881
374		95	4		0.995881
376	95	4			0.995881
377	95			4	0.995881
380	4		95		0.995881
384		6		93	0.999998
385	6		93		0.999998
566		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain