SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18668

Length: 2299 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene18668
CGTCGTGACCATGGGAAACGCATTGGTATTAGTAGGCCTGGCAGCTGCTGGAGGATCAGTAATTGCGCTCTGTATCCATCGTTTCAGGATCCGTTTGCCTTCGTCCAAAGGGGCATTACGCTTGTACAGTCTGTCTGAAGCTGCAGCTGAAAGCCTTTCAATGGCAAGCACTAATCTGATCAGTGCAACTGAAGAATGGAAATGCTTAAGGGAACACGTTGCAGATGTTGATAAGACACACCTGAGAAATTTACTGAAGGATGAAGCTCGCTGTGAATCAATGACAGTAGAATTTGACGGAATTATATTGGACTATTCTCGGCAAAGGATAACTCAAGAGACTGTGAAGAAGCTTTTTAAGCTAGCAGAGGTGGCGCATCTGAAGGAGAAGATTGACAAAATGTACAATGGAGACCATATAAATGTCACAGAGAATCGTCCTGTGCTTCATATTGCTCTAAGGGCTGCCAGGGGTACAATCATCAATTGTGATGGGAAGAATGTAGTTGATGATGTCTGGCAAGTTCTCGATAAGATTGGTGAATTTTCTGAAAGGGTTCGGACTGGGGCTTGGGTAGGTGCAACAGGGAAGTCGCTTAAAGATGTTGTGGCAGTAGGCATTGGTGGCAGCTTTCTGGGTCCACTTTTTGTGCACAGTGCTCTTCAAACAGATCCTGAGGCAGCTCAATGTGCAAATGGGCGTCAACTGCGATTTCTAGCAAATGTTGATCCAGTTGATGTCGCTCGGAGTATTAATGGGTTAAACCCGGAAACTACTTTAGTTGTTGTGGTATCAAAGACATTCACAACAGCAGAAACCATGCTAAATGCTCGAACATTAAGGACATGGATCACATCTGCCCTTGGTTCTGAAGCTGTTGCAAAGCACATGGTGGCAGTTAGTACTAACCTTAAGCTTGTAAAAGAATTTGGAATAGACCCACAAAATGCTTTTGCATTCTGGGATTGGGTTGGCGGTCGCTACAGTGTGTGCAGTGCTGTGGGTGCTCTCCCCTTATCACTTCAGTATGGGTTTCCTATTGTTAGCAAGTTTCTGGAGGGAGCAAGAAGTATAGATAACCATTTCCACACAACTCCATTTGAGAAAAATATTCCTGTTTTGCTTGGTCTCCTCAGTGTGTGGAATGTTTCCTTTCTTGGGTATCCAGCTAGGGCTATCTTGCCATACACTCAGGCTCTGGAGAAGTTTGCACCGCACATCCAGCAGCTTAGCATGGAGAGTAATGGGAAGGGAGTTTCTATTGATGGTGTGCCCCTCAATTTTGAGGCTGGTGAAATAGATTTTGGAGAACCTGGTACAAATGGCCAGCATAGCTTTTACCAGTTAATTCATCAGGGTCGTGTAATTCCTTGTGATTTTATTGGCATCGTCAAGAGCCAGCAGCCCATTTATCTACAAGGGGAAGTTGTCAGTAACCACGATGAGCTCATGTCTAATTTTTTTGCACAGCCAGATGCTCTTGCATGTGGGAAGACTCCTGAGGAGTTGAGGAATGAGAAAGTTTCTGATCATCTTGTTGCACACAAGACATTCTCTGGGAATCGACCATCACTAAGCATCTTACTACCATCATTGACTGCATATAACATAGGCCAGTTGTTAGCAATGTATGAACACAGGATTGCAGTTCAGGGTTTCATTTGGGGCATTAATTCCTTTGACCAATGGGGCGTGGAGCTTGGCAAGTCACTGGCATCTCGTGTACGAGCTCAGCTGAATTTGTCTCGCACTGAAGGGAAGCCAGTTGAGGGCTTTAACCCCAGCACCACAATGTTGATAAAACGATACTTGAAGGAAAATGCTCCAATTACTGTGGACTTTCTCAGCTCAAAATCATAGTACATTCTTTTCTATTTGTTGAGCACCAGTCAGTCTTTTGATTTTGAATGCCAGTCCTTATTTTGTATTTGAATGAGAGAGATTCACTTATGTAGAAAGCTTTCTGTTAAAATGGAGGCACTTTTGATGATCAGGAATCGATATTTTTTTGTCATAAACGGGGAACCCAGTATTGGTATCTTCAATTGAGTTGAAAATAACATGCATCTTCATAATAAAGAAACTGGTGAAATCTTTTCCAGTTTAGAAACTCTATTTGCTATCCAGTATCCACTTCCAGTATCATTTTTTTCCAGTATCCACTTCATTAGTTTCGTAGTGTTTATCTCTTTAGAGATGTATATGGTATTATCATTATTTTTTACTATTTCTGTAAATAGAAACAATTTTTGGAGATTTACACAGCTCAAATACTAATTGATATAGAGTGGAAAACTA

Ace file of the UniGene sp_v1.1_unigene18668

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glucose-6-phosphate isomerase (Fragment) n=1 Tax=Vitis vinifera RepID=E0CQ39_VITVI	-	-	80%
FL-Next	sp=Glucose-6-phosphate isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	cytosolic phosphoglucose isomerase	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glucose-6-phosphate isomerase.	EC:5.3.1.9	-	0.0	88%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	88%
Blast2go	Pentose phosphate pathway	00030	88%
Blast2go	Starch and sucrose metabolism	00500	88%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	88%
Blast2go	Biosynthesis of phenylpropanoids	01061	88%
Blast2go	Biosynthesis of terpenoids and steroids	01062	88%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	88%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	88%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	88%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	88%
Blast2go	Biosynthesis of plant hormones	01070	88%
Blast2go	Metabolic pathways	01100	88%
Blast2go	Biosynthesis of secondary metabolites	01110	88%

Source	GOs	Term	Type	Identity
Blast2go	gluconeogenesis	GO:0006094	Biological Process	88%
Blast2go	glycolysis	GO:0006096	Biological Process	88%
Blast2go	glucose-6-phosphate isomerase activity	GO:0004347	Molecular Function	88%
Blast2go	cytoplasm	GO:0005737	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Blast2go	Phosphoglucose isomerase (PGI)	IPR001672	-	88%
Blast2go	Phosphoglucose isomerase, conserved site	IPR018189	-	88%
Blast2go	Phosphoglucose isomerase, C-terminal	IPR023096	-	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NW06

Fln msg: your sequence is longer than subject: 617 - 346

Fln protein: MGNALVLVGLAAAGGSVIALCIHRFRIRLPSSKGALRLYSLSEAAAESLSMASTNLISATEEWKCLREHVADVDKTHLRNLLKDEARCESMTVEFDGIILDYSRQRITQETVKKLFKLAEVAHLKEKIDKMYNGDHINVTENRPVLHIALRAARGTIINCDGKNVVDDVWQVLDKIGEFSERVRTGAWVGATGKSLKDVVAVGIGGSFLGPLFVHSALQTDPEAAQCANGRQLRFLANVDPVDVARSINGLNPETTLVVVVSKTFTTAETMLNARTLRTWITSALGSEAVAKHMVAVSTNLKLVKEFGIDPQNAFAFWDWVGGRYSVCSAVGALPLSLQYGFPIVSKFLEGARSIDNHFHTTPFEKNIPVLLGLLSVWNVSFLGYPARAILPYTQALEKFAPHIQQLSMESNGKGVSIDGVPLNFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGIVKSQQPIYLQGEVVSNHDELMSNFFAQPDALACGKTPEELRNEKVSDHLVAHKTFSGNRPSLSILLPSLTAYNIGQLLAMYEHRIAVQGFIWGINSFDQWGVELGKSLASRVRAQLNLSRTEGKPVEGFNPSTTMLIKRYLKENAPITVDFLSSKS*

Protein Length: 618

Fln nts: CGTCGTGACC_-_ATGGGAAACGCATTGGTATTAGTAGGCCTGGCAGCTGCTGGAGGATCAGTAATTGCGCTCTGTATCCATCGTTTCAGGATCCGTTTGCCTTCGTCCAAAGGGGCATTACGCTTGTACAGTCTGTCTGAAGCTGCAGCTGAAAGCCTTTCAATGGCAAGCACTAATCTGATCAGTGCAACTGAAGAATGGAAATGCTTAAGGGAACACGTTGCAGATGTTGATAAGACACACCTGAGAAATTTACTGAAGGATGAAGCTCGCTGTGAATCAATGACAGTAGAATTTGACGGAATTATATTGGACTATTCTCGGCAAAGGATAACTCAAGAGACTGTGAAGAAGCTTTTTAAGCTAGCAGAGGTGGCGCATCTGAAGGAGAAGATTGACAAAATGTACAATGGAGACCATATAAATGTCACAGAGAATCGTCCTGTGCTTCATATTGCTCTAAGGGCTGCCAGGGGTACAATCATCAATTGTGATGGGAAGAATGTAGTTGATGATGTCTGGCAAGTTCTCGATAAGATTGGTGAATTTTCTGAAAGGGTTCGGACTGGGGCTTGGGTAGGTGCAACAGGGAAGTCGCTTAAAGATGTTGTGGCAGTAGGCATTGGTGGCAGCTTTCTGGGTCCACTTTTTGTGCACAGTGCTCTTCAAACAGATCCTGAGGCAGCTCAATGTGCAAATGGGCGTCAACTGCGATTTCTAGCAAATGTTGATCCAGTTGATGTCGCTCGGAGTATTAATGGGTTAAACCCGGAAACTACTTTAGTTGTTGTGGTATCAAAGACATTCACAACAGCAGAAACCATGCTAAATGCTCGAACATTAAGGACATGGATCACATCTGCCCTTGGTTCTGAAGCTGTTGCAAAGCACATGGTGGCAGTTAGTACTAACCTTAAGCTTGTAAAAGAATTTGGAATAGACCCACAAAATGCTTTTGCATTCTGGGATTGGGTTGGCGGTCGCTACAGTGTGTGCAGTGCTGTGGGTGCTCTCCCCTTATCACTTCAGTATGGGTTTCCTATTGTTAGCAAGTTTCTGGAGGGAGCAAGAAGTATAGATAACCATTTCCACACAACTCCATTTGAGAAAAATATTCCTGTTTTGCTTGGTCTCCTCAGTGTGTGGAATGTTTCCTTTCTTGGGTATCCAGCTAGGGCTATCTTGCCATACACTCAGGCTCTGGAGAAGTTTGCACCGCACATCCAGCAGCTTAGCATGGAGAGTAATGGGAAGGGAGTTTCTATTGATGGTGTGCCCCTCAATTTTGAGGCTGGTGAAATAGATTTTGGAGAACCTGGTACAAATGGCCAGCATAGCTTTTACCAGTTAATTCATCAGGGTCGTGTAATTCCTTGTGATTTTATTGGCATCGTCAAGAGCCAGCAGCCCATTTATCTACAAGGGGAAGTTGTCAGTAACCACGATGAGCTCATGTCTAATTTTTTTGCACAGCCAGATGCTCTTGCATGTGGGAAGACTCCTGAGGAGTTGAGGAATGAGAAAGTTTCTGATCATCTTGTTGCACACAAGACATTCTCTGGGAATCGACCATCACTAAGCATCTTACTACCATCATTGACTGCATATAACATAGGCCAGTTGTTAGCAATGTATGAACACAGGATTGCAGTTCAGGGTTTCATTTGGGGCATTAATTCCTTTGACCAATGGGGCGTGGAGCTTGGCAAGTCACTGGCATCTCGTGTACGAGCTCAGCTGAATTTGTCTCGCACTGAAGGGAAGCCAGTTGAGGGCTTTAACCCCAGCACCACAATGTTGATAAAACGATACTTGAAGGAAAATGCTCCAATTACTGTGGACTTTCTCAGCTCAAAATCATAG___TACATTCTTTTCTATTTGTTGAGCACCAGTCAGTCTTTTGATTTTGAATGCCAGTCCTTATTTTGTATTTGAATGAGAGAGATTCACTTATGTAGAAAGCTTTCTGTTAAAATGGAGGCACTTTTGATGATCAGGAATCGATATTTTTTTGTCATAAACGGGGAACCCAGTATTGGTATCTTCAATTGAGTTGAAAATAACATGCATCTTCATAATAAAGAAACTGGTGAAATCTTTTCCAGTTTAGAAACTCTATTTGCTATCCAGTATCCACTTCCAGTATCATTTTTTTCCAGTATCCACTTCATTAGTTTCGTAGTGTTTATCTCTTTAGAGATGTATATGGTATTATCATTATTTTTTACTATTTCTGTAAATAGAAACAATTTTTGGAGATTTACACAGCTCAAATACTAATTGATATAGAGTGGAAAACTA

Fln Alignment:

sp_v1.1_unigene18668___MLNARTLRTWITSALGSEAVAKHMVAVSTNLKLVKEFGIDPQNAFAFWDWVGGRYSVCSAVGALPLSLQYGFPIVSKFLEGARSIDNHFHTTPFEKNIPVLLGLLSVWNVSFLGYPARAILPYTQALEKFAPHIQQLSMESNGKGVSIDGVPLNFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGIVKSQQPIYLQGEVVSNHDELMSNFFAQPDALACGKTPEELRNEKVSDHLVAHKTFSGNRPSLSILLPSLTAYNIGQLLAMYEHRIAVQGFIWGINSFDQWGVELGKSLASRVRAQLNLSRTEGKPVEGFNPSTTMLIKRYLKENAPITVDFLSS
A9NW06_______________MLNARTLRTWITSALGSEAVAKHMVAVSTNLKLVKEFGIDPQNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFPIVSKFLEGARSVDNHFHTTPFEKNIPVLLGLLSVWNVSFLGYPARAILPYTQALEKFAPHIQQLSMESNGKGVSIDGVPLNFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGIIKSQQPIYLQGEVVSNHDELMSNFFAQPDALACGKTPEELRSEKVSDHLIAHKTFSGNRPSLSILLPSLTAYNVGQLLAMYEHRIAVQGFIWGINSFDQWGVELGKSLASRVRAQLNMSRTEGKPVEGFNHSTAMLIKRYLKENAPIPVDLLPS

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
968		10	90		0.90298
1024	38		55		1.0
1423	88	11			0.923564
1605		90	10		0.90298
1606	90	10			0.90298
1608	88		11		0.923564
1610	90	10			0.90298
1613	90	10			0.90298
1614	10			90	0.90298
1655		92	7		0.999532
1656	89		3	7	0.998606
1658	7	3	89		0.998606
1659		7	92		0.999532
1660		7		92	0.999602
1663		92	7		0.999602
1664	88	3	7		0.998862
1665		7		92	0.999602
1667			11	88	1.0
1668			92	7	0.999602
1669	7		88	3	0.998862
1670		7	92		0.999602
1671			88	11	1.0
1696		7		92	0.999602
2111	16		83		0.994512
2113	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain