SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18646

Length: 500 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene18646
ATGGGGACTTATGGATAACTACAGCGCAGCGACCTCCCCCAATCCCCTACGGTACGCTTCTGTCTCGACGAGCGAATTCTACTGCGCAACAGAAGGCAAGTGGGTTTCCTCCGTTCATATCTGGCAGGCGAAATTGGTTGCTTTGGACAGAGGAAGTTAATCAACAAACAAAGACATCTCACAATGGCAAAGAATAACTTCAAGAAGGAACATCCTTTAGAGAGGAGGCAAGCAGAGGCTGGACGAATCCGAGACAAGTACCCTGATAGAATACCTGCTATTGTTGAGAAGGCAGAGAAGAGTGACATACCGGACATTGACAAGAAAAAATATCTGGTGCCAGCAGATCTTACGGTGGGGCAATTTGTATACGTGATTCGCAAGAGAATAAAGTTGAGCGCAGAGAAAGCAATATTTATATTTGTGAACAATGTGCTGCCTCCAACTGCGGCCCTGATGTCATCTGTGTACGAGGAGCACAAGGATGAAGATGGTTTTTC

Ace file of the UniGene sp_v1.1_unigene18646

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	microtubule-associated protein 1 light chain 3 [Gossypium hirsutum]	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	protein	-	-	95%

Source	GOs	Term	Type	Identity
Blast2go	receptor activity	GO:0004872	Molecular Function	95%
Blast2go	endonuclease activity	GO:0004519	Molecular Function	95%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	95%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NS23

Fln msg: Distance to subject end: 23 aas, your sequence is shorter than subject: 105 - 129

Fln protein: MAKNNFKKEHPLERRQAEAGRIRDKYPDRIPAIVEKAEKSDIPDIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVNNVLPPTAALMSSVYEEHKDEDGF

Protein Length: 106

Fln nts: ATGGGGACTTATGGATAACTACAGCGCAGCGACCTCCCCCAATCCCCTACGGTACGCTTCTGTCTCGACGAGCGAATTCTACTGCGCAACAGAAGGCAAGTGGGTTTCCTCCGTTCATATCTGGCAGGCGAAATTGGTTGCTTTGGACAGAGGAAGTTAATCAACAAACAAAGACATCTCACA_-_ATGGCAAAGAATAACTTCAAGAAGGAACATCCTTTAGAGAGGAGGCAAGCAGAGGCTGGACGAATCCGAGACAAGTACCCTGATAGAATACCTGCTATTGTTGAGAAGGCAGAGAAGAGTGACATACCGGACATTGACAAGAAAAAATATCTGGTGCCAGCAGATCTTACGGTGGGGCAATTTGTATACGTGATTCGCAAGAGAATAAAGTTGAGCGCAGAGAAAGCAATATTTATATTTGTGAACAATGTGCTGCCTCCAACTGCGGCCCTGATGTCATCTGTGTACGAGGAGCACAAGGATGAAGATGGTTTTTC

Fln Alignment:

sp_v1.1_unigene18646___MAKNNFKKEHPLERRQAEAGRIRDKYPDRIPAIVEKAEKSDIPDIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVNNVLPPTAALMSSVYEEHKDEDGF
A9NS23_______________MAKNNFKKEHPLERRQAEAGRIRDKYPDRIPAIVEKAEKSDIPDIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVNNVLPPTAALMSSVYEEHKDEDGF

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
324	83	16			0.999991
326	71			28	1.0
327	71	28			1.0
328	71		28		1.0
329	71			28	1.0
330	71		28		1.0
332		28		71	1.0
333	71	28			1.0
341	14		85		0.993533
342		71		28	1.0
345		28	71		1.0
349		11	88		0.923564
350	88		11		0.923564
353			12	87	0.992554
357			87	12	0.992554
362		12	87		0.992554
366	87			12	0.992554
367		12		87	0.992554
368	12			87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain