SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18642

Length: 1403 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18642

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L17, putative; K02880 large subunit ribosomal protein L17e	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	60s ribosomal protein	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	91%
Blast2go	translation	GO:0006412	Biological Process	91%
Blast2go	peptidase activity	GO:0008233	Molecular Function	91%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	91%
Blast2go	large ribosomal subunit	GO:0015934	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein L22/L17	IPR001063	-	91%
Blast2go	Ribosomal protein L22/L17, eukaryotic/archaeal	IPR005721	-	91%
Blast2go	Ribosomal protein L22/L17, conserved site	IPR018260	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYW9

Fln msg:

Fln protein: MVKYSSEPVNPTKSCKARGSDLRVHFKNTRETAQAVKKLPLAKAKAYLEDVLAHKQAIPFRRFCGGVGRTAQAKSRHSNGQGRWPVKSVQFLLQLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEAPVKKEVESQIAPTRSRRGQALSSGISS*

Protein Length: 185

Fln nts: ATGGGGAAAACTCGTACCAACGCCGACACGCAGCTAAGTTTTTTGCCCATACGCCCTCCTCGTTAGGGTTTGTGGATTTGGGGTTTATTTAGGGTTTGTTCCTTGTAAATAACGTTGTCACTTTATTGAAGAAAGCGGAGATCAAACGACAGCAGAGGAGACGGAGCCGAAGCAGAAATCAGAACACA_-_ATGGTTAAGTATTCAAGCGAGCCTGTTAATCCTACCAAATCATGCAAGGCTCGGGGGTCAGACCTACGTGTCCATTTTAAGAATACTCGGGAAACAGCTCAAGCAGTGAAGAAGTTACCTTTGGCTAAGGCTAAAGCTTATCTTGAGGATGTGCTTGCCCACAAGCAAGCAATACCTTTCCGTCGCTTTTGTGGGGGGGTAGGACGTACCGCCCAAGCAAAGTCTCGGCATTCAAATGGCCAGGGCCGCTGGCCTGTCAAGTCTGTTCAGTTTCTGTTACAACTGTTGAAGAATGCAGAAAGCAATGCAGAGGTGAAGGGACTTGATGTGGATGCACTATATATTTCACACATCCAAGTAAATCAGGCTCAAAAGCAGCGGAGACGAACTTATCGTGCCCATGGAAGAATCAATCCTTACATGTCATCTCCATGCCATATTGAATTAATTTTGTCCGAGAAAGAAGCACCAGTTAAAAAGGAGGTCGAATCACAAATTGCTCCCACTAGGTCAAGGAGAGGCCAAGCTCTTAGTAGTGGCATCTCTTCCTGA___GGTTCTAGAGCAGTTCTTATGCAGCACTTCACTACCACAATTTTGAAAGCAAGGGATTATAAAGACCTGAAGTATTTGTAGTTTTCTTATGGGAACTATACCACCTATTTGTCTACCAAACTGAAATTCTAAAGTCTAGATTCTAGACGAACAGGAATTTGTGAAATTTTGTTTTGTATTATTTTTATTGCAGTTATTTTTTGTTCTTGATTGCTGTCTATAAGGTTTGAAACAGCAGATTCAGCAAGATGGAAACCTTCGACTTCTATTCACTTTAATGTTTAAGACACCGAGGAAAGATTGGAAGATTACTTGCAGGATTATTTCTTTGCCGAGTAACTAAAAATGGACTTATTTTCCATGCATACCATGTGGAAGTGTCTGCAAGGCTGCTTGGGGAATGAAGCTTTGGGTTCAAAGTGTTTGTTGCTAGAATTCCGACAGACCTTTTAATGTTCGAGACTTGTATGGTGCACCTTAAGACTATGTGATAATATTTATGAAGTGGCGGGTTGAGTTACTTTGGGCTGTGCATCTCGTAATTGTTTCTATTTTATGTGTTGGTTTTATAAAATCATGTAAAAATACGGTACATCTATTTCAGTTCTTGTAAATGCTAACCTTCAAATTTGAAACTTTTCTTGAGCATCAGCCAAGTTGCAC

Fln Alignment:

sp_v1.1_unigene18642___MVKYSSEPVNPTKSCKARGSDLRVHFKNTRETXXXXXXXXXXXXXXXXEDVLAHKQAIPFRRFCGGVGRTAQAKSRHSNGQGRWPVKSVQFLLQLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEAPVKKEVESQIAPTRSRRGQALSSGISS
A9NYW9_______________MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAQAVKKLPVAKAKAYLEDVLAHKQAIPFRRFCGGVGRTAQAKSRHSNGQGRWPVKSVQFLLQLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEVPVKKEAESQIAPTRSRKGRALSSGISS

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
526	2		97		0.944212
720		4		96	0.99411
901	87	12			0.999964
909	84	15			0.999986
917			12	87	0.992554
919		14		85	0.993533
921		14	85		0.993533
924		16		83	0.994512
925	20			80	0.995493
1073		30		70	1.0
1216		20	80		1.0
1263	13			86	0.999973
1264	13			86	0.999973
1266	40	60			1.0
1267	20		20	50	0.999999
1268	20			80	0.999996
1269	20			80	0.999996
1270	25		62	12	1.0
1271	12		87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain