SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18627

Length: 1429 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18627

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	EB_dh domain containing protein	-	-	1.0e-23	24%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	protein	-	-	0.0	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA86

Fln msg:

Fln protein: MANNIKCLVLLVAISYMVESIQSHNEAEGGFHCDSGATAQIQADYMPGIITLDGKPQDWNNILGHSFPLRPALDPDEDKEYTGGKMTVKALHDGHNIFFLLEVPGEYRYVQGMEMSCPSVSLMFQVGGNATYHNMGACKETVDSCTSKSCGGHEVDIMHFSIGTAIPGRLYGANLIDNTNGTGGDRFGHLVDLYAWNPHCRYLDGMGPQGNGNGANFSAQNDWHGAWWHDLIDNSFGLLENASPYASTGSKGTYTFEFSRPLRTSDRLQQDVQFVIGQTHNFSAAFWYPVNGNPWAKSSHYSVSCDWVTLEIISAEKESHVVSSTRAVDTVNIFSLVLSLSAFGVSIFVGWWVRKGKSMTFTPIDHL*

Protein Length: 369

Fln nts: CGTCGTGACCTTGGCTGTCATGGGGATTCACGTTTTGTTTCTTACATAAAATAGGAGTTCTGGAATGATTTAAAATGTGAAGAAGTGAAGTCCAAGGTTTCTGAAAGGATGTAAGATGTGAAGAATTGAAGTCCTGTGCAGTGCGAATGTTTCTTCAGCGCAGTTCGATCCCCTACACCACATCTATAGTTAACAATCTCCAGGACTGATCG_-_ATGGCCAATAACATCAAATGTTTGGTATTGTTGGTGGCCATTAGTTATATGGTTGAGTCGATCCAGAGCCACAATGAAGCAGAAGGTGGATTTCACTGTGATTCGGGTGCCACTGCACAAATTCAAGCAGATTACATGCCTGGAATTATCACGTTGGATGGTAAACCACAGGACTGGAATAACATTCTTGGCCACTCATTTCCTCTCCGCCCAGCCCTCGATCCAGACGAGGATAAAGAATATACAGGCGGCAAAATGACTGTCAAGGCCTTGCACGATGGTCACAATATTTTCTTCCTGCTAGAAGTACCGGGGGAATATCGTTATGTGCAAGGAATGGAAATGAGCTGCCCTTCTGTATCACTCATGTTCCAAGTTGGCGGTAATGCAACATATCATAATATGGGTGCTTGCAAAGAGACGGTTGACAGTTGTACAAGCAAAAGTTGCGGTGGTCATGAAGTGGACATAATGCACTTTTCAATAGGAACTGCAATTCCAGGTCGTTTGTACGGTGCCAACCTAATTGATAATACAAATGGCACTGGAGGAGATAGGTTTGGCCATTTGGTTGATCTATATGCATGGAATCCACACTGTCGGTATCTTGATGGAATGGGTCCTCAAGGAAATGGAAATGGTGCTAATTTTAGTGCGCAAAATGATTGGCATGGAGCGTGGTGGCATGATTTGATTGACAATTCCTTTGGTCTTCTGGAGAATGCAAGCCCATATGCATCAACTGGTAGCAAAGGGACTTACACTTTTGAGTTTTCCAGGCCCCTGCGCACATCTGATCGTCTTCAACAGGATGTTCAATTTGTTATAGGACAGACACACAATTTCTCGGCTGCATTTTGGTACCCTGTAAATGGGAATCCTTGGGCTAAAAGTAGCCATTATTCTGTTAGCTGTGATTGGGTAACCTTAGAGATCATTTCAGCAGAGAAAGAAAGTCATGTGGTCTCATCAACCAGGGCTGTTGATACTGTAAATATTTTTTCACTTGTCTTATCACTCTCAGCTTTTGGTGTATCTATTTTCGTAGGTTGGTGGGTTAGGAAAGGTAAGTCGATGACTTTCACACCTATAGATCACCTTTAG___GATTATACAGCTAAATGTCAAACATATAAGCCATTGCCATTTAATGCACTGTATGATTTCATTTTTGAGGTCTACTTTAGTAAGAGTTCAATCATCGTTATGTTTAATGCAAG

Fln Alignment:

sp_v1.1_unigene18627___MANNIKCLVLLVAISYMVESIQSHNEAEGGFHCDSGATAQIQADYMPGIITLDGKPQDWNNILGHSFPLRPALDPDEDKEYTGGKMTVKALHDGHNIFFLLEVPGEYRYVQGMEMSCPSVSLMFQVGGNATYHNMGACKETVDSCTSKSCGGHEVDIMHFSIGTAIPGRLYGANLIDNTNGTGGDRFGHLVDLYAWNPHCRYLDGMGPQGNGNGANFSAQNDWHGAWWHDLIDNSFGLLENASPYASTGSKGTYTFEFSRPLRTSDRLQQDVQFVIGQTHNFSAAFWYPVNGNPWAKSSHYSVSCDWVTLEIISAEKESHVVSSTRAVDTVNIFSLVLSLSAFGVSIFVGWWVRKGKSMTFTPIDHL
D5AA86_______________MAKNIKYLVLVVAISFMIESIQSHNEA-GGFHCDSGATAQIQADYMPGIITLDGKSQDWNKIPGYSFPLRPALDPDEDKEYTGGKMTVKALHDGRNVFFLLEVPGEYRYVQGKQTSCPSVSLMFQVGGNAIYHNMGACKETVDSCTSKSCGGHEVDIMHFSIGTAIPGRLYGANIIDNTNGTGEDRFGHLVDLYAWNPHCRYLDGMGPQGNGNGANFSGQNDWQGAWWHDLIDNSLGLLANASPYASTGSKGTYTFEFSRPLRTSDRLQQDVQFVIGQAHNFSAAFWYPVNGNPWTKSSHYSVSCDWVPLEIISAEKESHVVPSTRAVDALNVISLVLSLLAFGVSIFVGWWVRKGKSMTFTPIDHL

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
75	33	66			0.997452
76	33		66		0.997452
83	33	66			0.997452
84		66	33		0.997452
85	33			66	0.997452
86	33			66	0.997452
90	33	66			0.997452
91	33			66	0.997452
99		66	33		0.997452
101		66		33	0.997452
102	66			33	0.997452
104			33	66	1.0
109			66	33	0.997452
211	90		10		0.90298
565		90		10	0.90298
959		14	85		0.999981
966	83			16	0.999991
971	81			18	0.999994
974		36		63	1.0
979	11			88	0.923564
1150	7	92			1.0
1174			25	75	1.0
1399	12			87	0.992554
1400	87	12			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain