SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18610

Length: 783 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18610

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	K-box multi-domain protein	-	-	2.0e-16	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	unknown [Picea sitchensis]	-	-	1.4013e-45	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	1.4013e-45	95%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	1.4013e-45	95%
Blast2go	nucleus	GO:0005634	Cellular Component	1.4013e-45	95%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Transcription factor, K-box	IPR002487	-	1.4013e-45	95%

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
646		19	61	19	1.0
676	15	84			0.999986
685	80		20		1.0
687	26		73		1.0
691	13		86		0.999973
745			28	71	1.0
758			16	83	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain