SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18605

Length: 2008 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene18605
CGTCGATGGCCATGGTGGAAGTTTCGGATTCCTCTGGCAGCTCGGCTTTAATATGCCCCTTGTTACTTTGAGATTCATGTCCAGAGGGAAAATGGGGTTCTCGCAGAGGATACTGGCAGTGATCTGTCTGGTGTGGTTTGCCTCTGCTGGGGTTCGAACCGAGGACGCTTACAAGTACTTTACATGGACTGTCACATATGGGACTATTTATCCCATGGGTGTCCCTCAGCAGGGGATCTTAATCAACGGCCAGTTTCCTGGACCCCAACTCGATGTTGTGACGAACGATAATGTTATTATCAATGTTTTTAACTATCTGAACGAGCCTTTTTTGCTTACATGGAATGGAATCCAGCAACGAAGAAATTCGTGGCAAGATGGAGTGCTGGGAACCAATTGTCCAATACTTCCCCGCAGAAACTTCACTTACAAATTTCAAGTCAAGGATCAGATCGGCACCTACTTTTATTTTCCTTCCACGGCTCTGCACAGGGCTGCTGGGGGATTTGGAGGTTTGGCCATTGCTAGCAGGTCTGTTATCCCTGTTCCGTACCCCACTCCTAATGGGGAATACACCGCTTTGATCGGAGACTGGTACAAACTTAATCACGCGGTTCTTCGAAGATGGCTTGATAATGGAAAAGCTCTCGGCATGCCCAACGGCGTTCACATAAACGGGCGGGGCAACGGGCTTTCTACATTCAAGGTCGACCCAGGGAAAACTTACAAGCTCCGGATTTCGAATGTGGGACTGTCAACGACGTTAAACTTCAGGATCCAGGGCCACAAGATGAAGCTGGTGGAAGTTGAAGGATCCCACACAATTCAGAACGTCTATGACTCCCTGGATATCCATGTGGGTCAGTCTTGTTCGGTGCTCATAACTGCAAACCAGGTTCCCAAAGACTACTACATAGTTGCATCCACGCGCTTCACAACTCCTGTGTTAAATGGAGTGGCTCTTCTGCGCTACAGCAACTCCAGGCAACCGGCCTCTGGCCCCCTACCTCCCGGTCCTACTATTCAGATCGACTGGTCTATCAACCAGGCGAAGTCCATCAGATGGAATCTGACGGCCAACGCAGCTCGCCCCAATCCACAGGGTTCCTATCATTACGGCCTCATAAAGCCTTCGAGAACTATCATCCTGGCCAATTCGGCTCCCATCATTAACGGAAAGCAGCGATACGCAGTAAATGGCGTCTCCTTCTTGCCTCTCGATACGCCCCTGAAACTAGCGGACTATTTCAAAATCCAGGGAGTATTCAATTTGGGTACCCTCCCTGATTACCCCAGAGGAGGAGGTGCGTACCTCCAGGCTGCAGTCATGTCGGGCCAGTTCAGGTCATTTATTGAGATCGTGTTCCAGAACAACGAAAACACAATTCAGTCCTGGCATGTAGATGGCTATTCCTTCTTCGTGGCGGGAATGGAGGGTGGACAATGGAATCCCGCTAGTAGGAAGAGCTACAATCTGTTCGATGCAGTTTCTCGCTCCACTACACAGGTATATCCCCAATCTTGGACTGCAATTTTAGTGATGCTGGACAATGCGGGGATGTGGAACATAAGGTCTGGGATGTGGGCAAGGCAGTACTTGGGGCAGCAGTTCTACATGAAAGTTGCAGGAGCTGAGATGCTCGACGAATACTCTGTTCCTCGAAACGCCCTTATGTGCGGGAGAGCCAGAGGCCAGCACCCCCGCCCATAGATGCCTTAATCGGCCCTTTATTGTTGTTCATCGTGATTCTCAGTGCTGTTGTTTTAATTCAATGCAAAGCTTTTGGTCACAGATGGTGACTATTGCTGGTTTTAACGAAGAATTTCTTGTTCTTCTTCATCACTGTAATATGCCATTGCAGGTGTGCTGTCAGTTTTAAGTCGAGAGGTTTGTTCTGTAAAACCCAGCCTCCCTGGTACGAAACAAATTAAACTTGTTCACATGGGAAGGAATTGGACATTGTGATCTTGGCAAACAGCTGGTTGAGTAATAAAATTATTATTTTTC

Ace file of the UniGene sp_v1.1_unigene18605

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Multicopper oxidase, putative n=1 Tax=Ricinus communis RepID=B9RXJ3_RICCO	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	multicopper oxidase	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pectinesterase.	EC:3.1.1.11	-	0.0	80%

Source	KEGGs	Term	Type	Identity
Blast2go	Pentose and glucuronate interconversions	00040		80%
Blast2go	Starch and sucrose metabolism	00500		80%
Blast2go	Metabolic pathways	01100		80%
Blast2go	L-ascorbate oxidase.	EC:1.10.3.3	-	80%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Ascorbate and aldarate metabolism	00053		0.0	80%
Blast2go	Metabolic pathways	01100		0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	80%
Blast2go	pectinesterase activity	GO:0030599	Molecular Function	80%
Blast2go	copper ion binding	GO:0005507	Molecular Function	80%
Blast2go	L-ascorbate oxidase activity	GO:0008447	Molecular Function	80%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Blast2go	Multicopper oxidase, type 1	IPR001117	-	80%
Blast2go	Cupredoxin	IPR008972	-	80%
Blast2go	Multicopper oxidase, type 2	IPR011706	-	80%
Blast2go	Multicopper oxidase, type 3	IPR011707	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWT1

Fln msg:

Fln protein: MPLVTLRFMSRGKMGFSQRILAVICLVWFASAGVRTEDAYKYFTWTVTYGTIYPMGVPQQGILINGQFPGPQLDVVTNDNVIINVFNYLNEPFLLTWNGIQQRRNSWQDGVLGTNCPILPRRNFTYKFQVKDQIGTYFYFPSTALHRAAGGFGGLAIASRSVIPVPYPTPNGEYTALIGDWYKLNHAVLRRWLDNGKALGMPNGVHINGRGNGLSTFKVDPGKTYKLRISNVGLSTTLNFRIQGHKMKLVEVEGSHTIQNVYDSLDIHVGQSCSVLITANQVPKDYYIVASTRFTTPVLNGVALLRYSNSRQPASGPLPPGPTIQIDWSINQAKSIRWNLTANAARPNPQGSYHYGLIKPSRTIILANSAPIINGKQRYAVNGVSFLPLDTPLKLADYFKIQGVFNLGTLPDYPRGGGAYLQAAVMSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWNPASRKSYNLFDAVSRSTTQVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKVAGAEMLDEYSVPRNALMCGRARGQHPRP*

Protein Length: 554

Fln nts: CGTCGATGGCCATGGTGGAAGTTTCGGATTCCTCTGGCAGCTCGGCTTTAAT_-_ATGCCCCTTGTTACTTTGAGATTCATGTCCAGAGGGAAAATGGGGTTCTCGCAGAGGATACTGGCAGTGATCTGTCTGGTGTGGTTTGCCTCTGCTGGGGTTCGAACCGAGGACGCTTACAAGTACTTTACATGGACTGTCACATATGGGACTATTTATCCCATGGGTGTCCCTCAGCAGGGGATCTTAATCAACGGCCAGTTTCCTGGACCCCAACTCGATGTTGTGACGAACGATAATGTTATTATCAATGTTTTTAACTATCTGAACGAGCCTTTTTTGCTTACATGGAATGGAATCCAGCAACGAAGAAATTCGTGGCAAGATGGAGTGCTGGGAACCAATTGTCCAATACTTCCCCGCAGAAACTTCACTTACAAATTTCAAGTCAAGGATCAGATCGGCACCTACTTTTATTTTCCTTCCACGGCTCTGCACAGGGCTGCTGGGGGATTTGGAGGTTTGGCCATTGCTAGCAGGTCTGTTATCCCTGTTCCGTACCCCACTCCTAATGGGGAATACACCGCTTTGATCGGAGACTGGTACAAACTTAATCACGCGGTTCTTCGAAGATGGCTTGATAATGGAAAAGCTCTCGGCATGCCCAACGGCGTTCACATAAACGGGCGGGGCAACGGGCTTTCTACATTCAAGGTCGACCCAGGGAAAACTTACAAGCTCCGGATTTCGAATGTGGGACTGTCAACGACGTTAAACTTCAGGATCCAGGGCCACAAGATGAAGCTGGTGGAAGTTGAAGGATCCCACACAATTCAGAACGTCTATGACTCCCTGGATATCCATGTGGGTCAGTCTTGTTCGGTGCTCATAACTGCAAACCAGGTTCCCAAAGACTACTACATAGTTGCATCCACGCGCTTCACAACTCCTGTGTTAAATGGAGTGGCTCTTCTGCGCTACAGCAACTCCAGGCAACCGGCCTCTGGCCCCCTACCTCCCGGTCCTACTATTCAGATCGACTGGTCTATCAACCAGGCGAAGTCCATCAGATGGAATCTGACGGCCAACGCAGCTCGCCCCAATCCACAGGGTTCCTATCATTACGGCCTCATAAAGCCTTCGAGAACTATCATCCTGGCCAATTCGGCTCCCATCATTAACGGAAAGCAGCGATACGCAGTAAATGGCGTCTCCTTCTTGCCTCTCGATACGCCCCTGAAACTAGCGGACTATTTCAAAATCCAGGGAGTATTCAATTTGGGTACCCTCCCTGATTACCCCAGAGGAGGAGGTGCGTACCTCCAGGCTGCAGTCATGTCGGGCCAGTTCAGGTCATTTATTGAGATCGTGTTCCAGAACAACGAAAACACAATTCAGTCCTGGCATGTAGATGGCTATTCCTTCTTCGTGGCGGGAATGGAGGGTGGACAATGGAATCCCGCTAGTAGGAAGAGCTACAATCTGTTCGATGCAGTTTCTCGCTCCACTACACAGGTATATCCCCAATCTTGGACTGCAATTTTAGTGATGCTGGACAATGCGGGGATGTGGAACATAAGGTCTGGGATGTGGGCAAGGCAGTACTTGGGGCAGCAGTTCTACATGAAAGTTGCAGGAGCTGAGATGCTCGACGAATACTCTGTTCCTCGAAACGCCCTTATGTGCGGGAGAGCCAGAGGCCAGCACCCCCGCCCATAG___ATGCCTTAATCGGCCCTTTATTGTTGTTCATCGTGATTCTCAGTGCTGTTGTTTTAATTCAATGCAAAGCTTTTGGTCACAGATGGTGACTATTGCTGGTTTTAACGAAGAATTTCTTGTTCTTCTTCATCACTGTAATATGCCATTGCAGGTGTGCTGTCAGTTTTAAGTCGAGAGGTTTGTTCTGTAAAACCCAGCCTCCCTGGTACGAAACAAATTAAACTTGTTCACATGGGAAGGAATTGGACATTGTGATCTTGGCAAACAGCTGGTTGAGTAATAAAATTATTATTTTTC

Fln Alignment:

sp_v1.1_unigene18605___MGFSQRILAVICLVWFASAGVRTEDAYKYFTWTVTYGTIYPMGVPQQGILINGQFPGPQLXXXXXXXXXXXXXXYLNEPFLLTWNGIQQRRNSWQDGVLGTNCPILPRRNFTYKFQVKDQIGTYFYFPSTALHRAAGGFGGLAIASRSVIPVPYPTPNGEYTALIGDWYKLNHAVLRRWLDNGKALGMPNGVHINGRGNGLSTFKVDPGKTYKLRISNVGLSTTLNFRIQGHKMKLVEVEGSHTIQNVYDSLDIHVGQSCSVLITANQVPKDYYIVASTRFTTPVLNGVALLRYSNSRQPASGPLPPGPTIQIDWSINQAKSIRWNLTANAARPNPQGSYHYGLIKPSRTIILANSAPIINGKQRYAVNGVSFLPLDTPLKLADYFKIQGVFNLGTLPDYPRGGGAYLQAAVMSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWNPASRKSYNLFDAVSRSTTQVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKVAGAEMLDEYSVPRNALMCGRARGQHPRP
A9NWT1_______________MGFSQRILAVICVVWITAAGVRTEDAYKYFTWTVTYGTIYPMGVPQQGILINGQFPGPQLNVVTNDNVIINVFNYLNEPFLLSWNGIQQRRNSWQDGVLGTSCPIPPRRNFTYKFQAKDQIGTYFYFPSTLLHKAAGGFGGLAIASRSVISIPYPTPAGEYTALIGDWYKTNHAVLRRWLDSGRALGMPNGVHINGRGKGLSTFKVDPGRTYRLRISNVGLSTSLNFRIQGHKMKLVEVEGSHTVQNVYDSLDLHVGQSCSVLITADQAPKDYYIVASTRFTNPVLYGVALLRYSNSRQPASGPLPPGPTTQIDWSLSQARSIRWNLTANAARPNPQGSYHYGLIKPARTITLANSAPIINGKQRYAVNGVSFMPPDTPLKLADYFKIQGVFNLGTISDYPRGGGGYLQTAVMSGQFRSFIEIVFQNDENTIQSWHIDGYSFFVAGMDGGQWSPASRKGYNLFDAVSRSTTQVYPNSWTAVLLMLDNAGMWNVRSEIWARQYLGQQFYMKVAGFAGQDEYIVPRNALMCGRARGRHTRP

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
367	87			12	0.992554
483			75	25	1.0
485			25	75	1.0
489	25	75			1.0
490	75	25			1.0
492	75			25	1.0
493			75	25	1.0
501		20	80		1.0
502	15		75	10	1.0
503		10	90		0.999898
800		5	94		0.998397
806	94	5			0.998744
807		5	94		0.998894
811	93		6		0.99903
812	93	6			0.99903
813			93	6	0.99903
881		91		8	0.999807
884	90	10			0.999898
885	90		10		0.999898
887	10			90	0.999898
889		88		11	0.999937
890	88		11		0.999937
892	88		11		0.999937
893		88		11	0.999952
894		88	11		0.999952
896		12	87		0.999964
897	12		87		0.999964
898			12	87	0.999964
899			12	87	0.999964
1013		40		60	1.0
1071		33		66	1.0
1231		16		83	0.994512
1306	20		80		0.995493
1311			25	75	0.996473
1316		75	25		0.996473
1317		75	25		0.996473
1323			33	66	0.997452
1404			75	25	0.996473
1405	75		25		0.996473
1406			25	75	0.996473
1520	20		80		0.995493
1631	88	11			0.923564
1633		88		11	0.923564
1634		11		88	0.923564
1636	88			11	0.923564
1640		11	88		0.923564
1643		88		11	0.923564
1645	88		11		0.923564
1647			88	11	0.923564
1648	88		11		0.923564
1649	88			11	0.923564
1650		11		88	0.923564
1655		11		88	0.923564
1658		11		88	0.923564
1736	83		16		0.994512
1893			40	60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain