SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18600

Length: 1557 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18600

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative translocon-associated protein alpha subunit n=1 Tax=Jatropha curcas RepID=C9E1T6_9ROSI	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	translocon-associated protein alpha subunit precursor	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Translocon-associated protein (TRAP), alpha subunit	IPR005595	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQA4

Fln msg: your sequence is longer than subject: 258 - 69

Fln protein: MAISRFLAFLLLSLLLVGVCHVASSADVVDAQDEGGELGIVGDGVQDFGDAVLGTAPGIDTVCFFPKNSDKAVPAGEETELLVGINNDGEASLKVLSIKASLHLPFDHRLFVQNLTLQEFFNATVPPSAQATFPYSFTVSKFLQPGSFDLAGSILYEVDEQIFQTVFYNGTVEVVEASGILSIETVFLITLGLALLCLFGIWAYGQIQRFSKKTKRTTKVEVGTGNSDITNEWLQGTAFMQKLSNGQSRSMKSKKKK*

Protein Length: 259

Fln nts: ATGGGAAAGCATTAAATACTTTGTGCCCAATCAACGAGCATGCTCAACAAAACCCTAGATTTTCACCACCCACATGTGACCACAGCGTGAACATCTAGGGCTGCGCCCGCTAGTTTAGGGTCTGCCCTACACCTACACATACCCAATCCAGCCGTGGCACACATAACTAGCACAGTTGACCAGTGGCGTCTGATGACAAAGTCCGCATAAGCTTCGATTTCAGCCTCTCTATAAAAGCCTCCAAGCTTAAGCCTAGAGGAATCATTTTATATACCCAGTAGCAAGAAGTTTTTACAAGCAAATCTCAGCC_-_ATGGCGATCTCTCGATTTCTCGCGTTTTTACTGCTCTCACTGCTTTTAGTTGGCGTATGTCATGTGGCATCTTCTGCTGATGTTGTGGATGCCCAAGACGAGGGAGGGGAGCTCGGAATTGTTGGAGATGGTGTCCAAGATTTTGGGGATGCAGTCCTTGGAACAGCACCTGGAATAGATACAGTTTGCTTTTTCCCAAAAAACTCTGACAAAGCGGTTCCAGCAGGAGAGGAAACAGAATTACTTGTTGGAATAAATAATGACGGTGAAGCTTCTTTGAAGGTGCTTTCCATAAAAGCTAGCCTTCACTTGCCATTTGATCACAGGCTATTTGTGCAGAACCTCACGTTACAGGAATTTTTCAATGCCACCGTGCCTCCTTCAGCACAAGCAACCTTTCCATATTCCTTTACAGTCAGCAAATTCTTGCAGCCAGGCTCATTTGACCTCGCTGGTAGCATCTTATACGAGGTAGATGAACAGATATTTCAGACTGTATTTTACAATGGTACTGTTGAAGTTGTTGAGGCCAGTGGCATTCTCAGCATAGAAACAGTTTTTCTGATTACGCTCGGACTTGCTCTGCTCTGTCTTTTTGGGATATGGGCTTATGGACAAATACAACGCTTTTCTAAGAAAACAAAGAGGACAACAAAAGTAGAAGTTGGAACCGGAAATTCAGATATAACAAATGAGTGGCTGCAGGGAACTGCATTCATGCAGAAGCTTTCAAATGGTCAATCTCGATCAATGAAGTCAAAGAAAAAGAAATAA___ATAACAATAGTCTGGTTGCTGGTTCCTTGTGGAATTTATGGCAAGCCACTTGTTATTGGCTGCAGTGGTAAATATGAGCAGTTTTGTAGTCAACATGTAATGTAGACAATCAAGGTGAGGAGGTATAGATTTAGAGTTAGGTTAGTTGCGAATTGATGACCCGCTTCCCTCATTGTTCCATTGCAAATTTAAAAGGTGTGAGATTTTTAGGTTTCATATTTAATTTTCCTTAAAGCTAATAGTGCTAATTTGGCATCACTGTCTGAGTTGATGTTGTCAACGAAGTGTTTTGATTTTGTACTTGATTTCAATTTCATTTAGTTGGATTATAAGAATTATGATCCTTAATTTGATGAATTCAGTGGCATCATGGCCTTCCAAATGACTGGTTTCACCGAATTATTTACATGTTAGACATTGTAGTGACCTTGGCTGTCACTCAATTTTTATATACCCAGTAGCAAGAAGTTTTT

Fln Alignment:

sp_v1.1_unigene18600___MAISRXXXXXXXXXXXVGVCHVASSADVVDAQDEGGELGIVGDGVQDFGDAVLGTAPGIDTVCFFPK
C0PQA4_______________MAISRLLAFLLVSLLLVGICQVASSTEVVDAQDEGGELGIVGDGVQDFGDAVLGTAPGVDTVCFFPK

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
895			14	85	1.0
902	14			85	1.0
903		14	85		1.0
1027	92	7			0.999602
1028			7	92	0.999602
1031	92		7		0.999602
1035	92	7			0.999602
1036			92	7	0.999602
1037	88			11	1.0
1038	89	3	7		0.998606
1042			10	89	1.0
1046	92	7			0.999602
1047	88	7		3	0.998862
1070		7		92	0.999602
1082	80		5	5	0.99967
1083	90	10			0.999898
1088	89	10			0.999919
1445	10			90	0.90298
1446	10			90	0.90298
1447	10	90			0.90298
1448	90	10			0.90298
1451	33		66		1.0
1512		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain