SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18589

Length: 1240 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18589

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nonclathrin coat protein zeta2-COP n=1 Tax=Solanum lycopersicum RepID=Q9MAZ6_SOLLC	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	nonclathrin coat protein zeta2-cop	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	transport	GO:0006810	Biological Process	0.0	89%
Blast2go	viral capsid	GO:0019028	Cellular Component	0.0	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Longin-like	IPR011012	-	0.0	89%
Blast2go	AP complex, mu/sigma subunit	IPR022775	-	0.0	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMP8

Fln msg:

Fln protein: MESCPLIKNILLLDSEGKRVAVKYYSDDWPTLASKLAFEKSVFTKTQKTNARAEAEIGMFDSFVVVYKFISDLHFYVTGGDDENELILATVLQGFFDAVALLLRSNVEKRTALENLDLILLCLDEIVDGGIILETEASVIAGKVVTHGADGGGAPLSEQTISQALASAREHLARSLLK*

Protein Length: 180

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTTTATTCTCCACATTTTGGAGGAAGGGAAAATGAAATCGCAGATCCTCTTTGGGTAATTTGTCTGAACAGCCAGGCCTTGAATCCTCAATCCTTGCATTGGCGTCTCCCCGATCTTTGAAACGCAGAAA_-_ATGGAATCTTGTCCTTTGATCAAGAACATTTTGCTTCTAGATTCAGAGGGAAAACGGGTTGCAGTTAAGTACTATTCTGATGATTGGCCAACCCTTGCTTCAAAGCTAGCTTTTGAAAAATCTGTTTTTACAAAAACTCAGAAGACAAATGCCCGAGCAGAAGCGGAAATTGGCATGTTCGATAGCTTTGTTGTCGTCTATAAGTTCATCTCTGATCTGCATTTCTATGTCACTGGTGGTGATGATGAGAATGAGCTTATTTTGGCTACAGTTCTTCAAGGCTTCTTTGATGCGGTTGCGCTTCTTCTCAGGAGCAATGTGGAGAAAAGAACAGCTCTTGAGAATTTAGATCTCATCCTTCTTTGTCTTGACGAGATTGTTGATGGGGGAATCATTCTGGAGACTGAAGCAAGTGTAATTGCTGGAAAAGTGGTGACCCATGGTGCTGATGGTGGAGGCGCACCCCTATCTGAGCAGACTATATCTCAAGCACTTGCATCTGCACGGGAACATTTAGCAAGATCACTTCTAAAATAA___TCATTTGTTTAATCCTTCCTTGCATTTGAGTTTTGTCACCTTACTGGTGATCCTTGGCATGTGTGATGCTTGGTGGTTGTGGACATTGTTTGAATCTTATGCTTATTACTTTTCTAAATTGTAATTTTTCAATGGAATTACCTGCCATTTTGTCTTCCATTCCAAGCTAATCCAAATTCACATAACTAGGTTGGTTTCTTGATGCAAGCAAGTCTCAAAAAGTCTGAATATGGGGGAAAAAAGGTTAAATAACACTGCACCAGAAAATTAAATTCTGTCTTGAATTTTCATGTTTTGTGTTTTTGCATAAATTTTGAAAAGTTCAGGAAGTAGGATATGGTATTTTGTGTACCTCATAAGGGTCACAGATTTATATAAGCTTGTTTGCATAAGCTGCTCTTGAAGGCATTTTTTTTATAGTATTTTCCGAAGGAGGCAATCTTGAGTTATGCTATAACAGTAAGTGGCATGTAGTTTTGTTTAAAGCTTTATAAATGCAAATGTAATTTAATATGGGATTTCAATTATTAATAGCAGACCTGTGC

Fln Alignment:

sp_v1.1_unigene18589___MESCPLIKNILLLDSEGKRVAVKYYSDDWPTLASKLAFEKSVFTKTQKTNARAEAEIGMFDSFVVVYKFISDLHFYVTGGDDENELILATVLQGFFDAVALLLRSNVEKRTAXXXXXXXXXXXXXXVDGGIILETEASVIAGKVVTHGADGGGAPLSEQTISQALASAREHLAR
A9NMP8_______________MESCPLIKNILLLDSEGKRVAVKYYSDDWPTLASKLAFEKSVFTKTQKTNARAEAEIGMFDSFVVVYKFISDLHFYVTGGDDENELILATVLQGFFDAVALLLRSNVEKRTALENLDLILLCLDEIVDGGIILETEPSLIAGKVVTHGADGGGAPLSEQTISQALASAREHLAR

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
369		77	22		0.999999
370	77	22			0.999999
372		22	22	55	0.999999
376	30	10	60		1.0
377	70	20	10		0.999998
380			10	70	0.999998
381	20		80		0.999996
382	10	90			0.90298
383	90	10			0.90298
384		10		90	0.90298
387		90	10		0.90298
388			10	90	0.90298
389	90	10			0.90298
398		10	90		0.90298
399	10			90	0.90298
695	90	10			0.90298
698	80		20		0.995493
699	80			20	0.995493
987		10		90	0.90298
990	12			87	0.992554
991	12		87		0.992554
992	12			87	0.992554
993	12			87	0.992554
994	12			87	0.992554
1128		75		25	0.996473
1129		33	33		0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain