SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18588

Length: 1154 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18588

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABA4; ABA4 (abscisic acid (ABA)-deficient 4); intramolecular oxidoreductase	-	-	2.0e-38	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	protein	-	-	0.0	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Neoxanthin synthase.	EC:5.3.99.9	-	0.0	81%

Source	KEGGs	Term	Identity
Blast2go	Carotenoid biosynthesis	00906	81%
Blast2go	Biosynthesis of terpenoids and steroids	01062	81%
Blast2go	Biosynthesis of plant hormones	01070	81%
Blast2go	Biosynthesis of secondary metabolites	01110	81%

Source	GOs	Term	Type	Identity
Blast2go	photoprotection	GO:0010117	Biological Process	81%
Blast2go	regulation of superoxide anion generation	GO:0032928	Biological Process	81%
Blast2go	xanthophyll metabolic process	GO:0016122	Biological Process	81%
Blast2go	abscisic acid biosynthetic process	GO:0009688	Biological Process	81%
Blast2go	neoxanthin synthase activity	GO:0034020	Molecular Function	81%
Blast2go	PSII associated light-harvesting complex II	GO:0009517	Cellular Component	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWL4

Fln msg: Separated hits, possible frame ERROR between 220 and 264, your sequence is shorter than subject: 203 - 241

Fln protein: MASSYHFSQASLLSFQANRSGNLLNYNSAIQKLNYCSILRRECNGLSGSAKVLLPPTGVxxxxxxxxxxxxxxxxTKRSMESNIPYIVLGALYAYLLFLSWTPETLRLMFASKYWLPAS*PWLSPAITRMFASDLTIASAWLHLLTVDLFAARQVFQDGLKDGIETRHSITLCLLFCPIGIMSHMLTKVIVEQQKLIIEDER*

Protein Length: 204

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTTCAAACAACACC_-_ATGGCATCTTCCTACCACTTCTCCCAGGCTTCCTTGCTCTCATTCCAGGCCAATAGATCAGGAAATCTATTGAATTATAATAGTGCAATTCAGAAGTTGAACTACTGTAGTATTCTAAGAAGGGAATGTAATGGTTTGTCGGGGTCTGCAAAGGTCCTGCTCCCACCCACCGGAGTTCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTACAAAAAGATCAATGGAAAGCAATATTCCATATATTGTACTTGGAGCTCTGTATGCGTATTTGCTGTTTCTCTCATGGACACCAGAAACTTTGCGCTTGATGTTTGCAAGCAAGTACTGGCTCCCAGCGTCGTGACCTTGGCTGTCACCTGCCATTACTAGGATGTTCGCAAGTGACCTGACAATAGCTTCTGCCTGGCTACACCTCTTGACTGTTGACCTGTTTGCTGCAAGGCAAGTCTTTCAGGATGGCTTGAAGGATGGAATTGAGACTCGTCACTCTATAACATTATGCCTCCTATTTTGCCCAATAGGAATCATGTCTCACATGTTAACAAAGGTAATTGTTGAGCAACAGAAACTCATAATAGAGGATGAGAGGTGA___TATGCTCTGAAAAATTAGATGCTGCAAGGGATGCATCTTTTTTATGTTAGTTTTAAATAACACCATTTGTGAACTTCATCAATTAGTCATGGGGCTAGGAGATCCTTGCCATGTTGTCAATCATGTGTGTTTTCTCTTCTGAGTTGAACGTGATTTCAATAGTTTTACTTTATAACTGACTCTTATCGTAGTCTTCCATATTCCAGTGGAAAGATATTGCTCTCTTTGTGTCTCTATTGTATGGAATCTATTTTATTTCGGGGAAGCAAGGGAATTTTTAAAATACAAATTTTCACAAAGCTCAAGTCTAATACCGAGTTACCAGCCTCATTTGATATATAATGTAAAGCATTAGTCACATCTTCAAGTATTTCGTCAAAACATATTGTAATAATGACTTTCTATTTGCAATAATGTCTTATGTTTGTTTTGCTTGAACATTCTCCAAGGATATTTAGTCCAAATTTTAGTTTGAGAATGAAGTGTTACGCATGTTGTCTTGGACTC

Fln Alignment:

sp_v1.1_unigene18588___MASSYHFSQASLLSFQANRSGNLLNYNSAIQKLNYCSILRRECNGLSGSAKVLLPPTGVQxxxxxxxxxxxxxxxTKRSMESNIPYIVLGALYAYLLFLSWTPETLRLMFASKYWLPAS*PWLSPAITRMFASDLTIASAWLHLLTVDLFAARQVFQDGLKDGIETRHSITLCLLFCPIGIMSHMLTKVI
A9NWL4_______________MASSYCFSQASLLSFQGNKSQNVLNYSCAIQNVNYYSMLRRECNAFSWSAKVLLPLTRVQxxxxxxxxxxxxxxxTKRSIESNIPYIVLGALYAYLLFLSWTPETLRLMFASKYWLPEL-----PGITRMFSSDLTIASAWLHLLTVDLFAARQVFHDGLKDGIETRHSIILCLLFCPVGIMSHMVTKAI

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
527		10	89		0.999919
529	89			10	0.999919
530		10		89	0.999919
534	89	10			0.999919
791		8		91	0.999807

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain