SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18577

Length: 1269 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18577

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Probable mannitol dehydrogenase n=2 Tax=Fragaria x ananassa RepID=MTDH_FRAAN	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	sinapyl alcohol dehydrogenase	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	90%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	90%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	90%

Source	InterPros	Term	Type	Identity
Blast2go	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	90%
Blast2go	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	90%
Blast2go	GroES-like	IPR011032	-	90%
Blast2go	Alcohol dehydrogenase, C-terminal	IPR013149	-	90%
Blast2go	Alcohol dehydrogenase GroES-like	IPR013154	-	90%
Blast2go	NAD(P)-binding domain	IPR016040	-	90%
Blast2go	Polyketide synthase, enoylreductase	IPR020843	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZE7

Fln msg:

Fln protein: MVKPEESCQVEGWAAKDDSGILSPFNFTRRNTGSHDVTFKVAYCGVCHSDLHQIRNEWKNAQYPMVPGHEIVGTVLEVGSEVKNFTVGDRVGVGCMVWSCQQCDSCSKDQEQYCEKVVWTYNGIYLDGSPTFGGYSSLMVCDQRFVVKIPENLPFDAAAPLLCAGITVYSPMQYFQMTEPGKSLGVVGLGGLGHMAVKFGKAFGLKVTVISTSPKKEKEAREYLGADHFLISKDEKQMQDAARSLDYIIDTVAADHPLVPLISLLKVNGKLVLVGIPEKPLSLPPVALTSGRKFVGGSAIGGIKETQEMLEFCGKHNITCMIENITIDYVNTAMERLVKGDVKYRFVINVAESFSGPTAK*

Protein Length: 362

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTATTTCTGATCTTGCTGTTGTGAGTTTTATCGTCTGGAATACGACCTGACATTTTGATTTTTACAAAGAGAAT_-_ATGGTGAAGCCAGAAGAATCATGTCAAGTTGAAGGATGGGCTGCCAAGGACGACTCTGGCATTCTCTCGCCCTTCAACTTCACTCGCAGGAACACTGGATCCCATGATGTAACTTTCAAGGTCGCATACTGTGGAGTCTGTCACTCTGATTTGCACCAAATTCGGAACGAATGGAAAAATGCCCAATACCCAATGGTTCCAGGCCACGAAATCGTAGGGACTGTGCTTGAAGTGGGATCAGAGGTGAAGAATTTCACTGTGGGAGATCGCGTGGGCGTGGGCTGCATGGTTTGGAGTTGCCAACAGTGTGATTCTTGTAGCAAAGATCAAGAACAGTACTGTGAGAAGGTTGTCTGGACATATAACGGCATTTATTTGGATGGGTCTCCTACATTCGGAGGTTATTCTTCTTTGATGGTTTGTGACCAAAGGTTTGTAGTGAAGATCCCAGAGAACCTGCCGTTTGATGCAGCAGCACCATTGCTATGCGCAGGAATAACTGTATACAGCCCCATGCAATACTTCCAAATGACAGAGCCTGGAAAAAGCCTTGGCGTTGTGGGGCTTGGTGGTTTGGGACACATGGCTGTCAAATTTGGCAAAGCTTTTGGACTGAAAGTAACGGTGATCAGTACATCGCCCAAGAAGGAAAAAGAAGCCAGAGAGTATTTGGGGGCAGATCACTTCCTCATCAGCAAAGATGAGAAACAGATGCAGGATGCAGCCAGGTCCCTGGATTACATAATTGACACAGTGGCTGCCGACCATCCCTTGGTGCCTCTCATCAGTTTATTGAAGGTGAATGGGAAATTGGTTTTGGTTGGCATCCCTGAAAAGCCTCTCTCTCTCCCTCCGGTGGCACTCACATCAGGTCGGAAATTTGTAGGAGGCAGCGCAATTGGAGGAATAAAGGAGACACAGGAGATGCTGGAGTTCTGTGGAAAACATAACATCACTTGCATGATAGAGAACATAACAATCGACTATGTGAACACAGCAATGGAACGATTAGTGAAGGGAGATGTGAAGTACCGATTTGTAATCAACGTTGCTGAAAGCTTTTCTGGTCCAACAGCAAAGTGA___GTGAGATTCAGAGAATGCTTCCATATTCACCAATTTTCAACAGAGTAACCTGACTTGTGGAAGCATTGCTCATGTTCGAGTCATGAA

Fln Alignment:

sp_v1.1_unigene18577___QVEGWAAKDDSGILSPFNFTRRNTGSHDVTFKVAYCGVCHSDLHQIRNEWKNAQYPMVPGHEIVGTVLEVGSEVKNFTVGDRVGVGCMVWSCQQCDSCSKDQEQYCEKVVWTYNGIYLDGSPTFGGYSSLMVCDQRFVVKIPENLPFDAAAPLLCAGITVYSPMQYFQMTEPGKSXXXXXXXXXXHMAVKFGKAFGLKVTVISTSPKKEKEAREYLGADHFLISKDEKQMQDAARSLDYIIDTVAADHPLVPLISXXXXXXXXXXXXIPEKPLSLPPVALTSGRKFVGGSAIGGIKETQEMLEFCGKHNITCMIENITIDYVNTAMERLVKGDVKYRFVINVAESFSGPTA
A9NZE7_______________EVEGWAAKDESGILSPFNFTRRKTGSHDVTFKVAYCGICHSDLHQIRNDWKTSQYPMVPGHEIVGTVIEVGSQVKNFAVGDRVGVGCMVWSCQQCDSCSKDHEQYCEKVVWTYNGIYVDGSPTLGGYSSLMVCDHRFVVKIPECLPFDAAAPLLCAGITVYSPMKYFQMTEPGKSLGVVGLGGLGHMAVKFGKAFGLKVTVISTSPQKEKEAREHLGADNFLISKDQKQMLEAARSLDYIIDTVSADHPLHPIINLLKVNGKLVVVGMPEKPISFHPATVIFGRRFVGGSMIGGVKETQEMLDFCAEHNISCVIESIPMDYVNTAMQRLEKGDVKYRFVIDVTGSFSSPKA

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
28	80			6	0.999961
352	15			84	0.999986
356	53		46		1.0
361			50	50	1.0
373	40		60		1.0
427	15	7		76	0.999983
470	42		57		1.0
592	87			12	0.992554
625		14		85	0.993533
767			33	66	0.997452
768	66			33	0.997452
816	75			25	0.996473
853	66		33		0.997452
863	66		33		0.997452
864	44			55	1.0
866		44	55		1.0
867	37			62	1.0
868			62	37	1.0
869	62	37			1.0
876		75		25	1.0
879		37		62	1.0
881	62			37	1.0
887		62		25	1.0
929		88	11		0.923564
954		27	72		1.0
956		5	66	27	1.0
960	5		27	66	1.0
962	27	72			1.0
966	23			76	1.0
967		23		76	1.0
989	13		86		0.999973
992		85	14		0.999981
1019	85			14	0.999981
1029		85		14	0.999981
1076	83			16	0.999991
1077	83	16			0.999991
1109	83		16		0.999991
1136	20		80		0.999996

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain