SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18576

Length: 1493 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18576

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	leucine-rich repeat family protein / extensin family protein	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	78%
Blast2go	structural constituent of cell wall	GO:0005199	Molecular Function	78%
Blast2go	protein binding	GO:0005515	Molecular Function	78%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	78%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	0.0	78%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTA1

Fln msg: Distance to subject end: 576 aas, your sequence is shorter than subject: 378 - 946

Fln protein: MQQPGFVVLLFLGFLVGLAAAQSGFKNRLSDEEVNYIAHRQLLYYKDEFGDRGERVAVDPRFKFPNPKLKDAYIALQAWKQAILSDPLNITGDWVGPNVCNYTGVFCSPLPYNKSIVVVAGIDLNHADIAGYLPTELGLLTDLALFHINTNRFCGILPHSFKNMTQLYELDISNNRFAGPFPKVALHLPSLKYLDIRFNEFEGKLPTKLFDKDLDAIFVNNNRFHLEIPSNLGNSPVSVIVFANNNLGGCLPPSLGNMAATLDEIILMNSNLSGCLPSDITLLKNLTVFDVSFNKLVGPLPDSIGKMVRLEQLDVAHNMLSGNVPQSICGLPNLANFTYSYNFFTGEAPNCLALPRRGATFDDKRNCIPGRSAQTVTP

Protein Length: 379

Fln nts: TGAAGCGATAGCGATGGAAACGCGGGTTGTAGAAATTCATAGCTCATTCATTCTGTTAGTATTAATATGACGTCGTGACCTTGGCTGTCACTCAAGATTTGCATTGGTATTCACTGATATCATTGAGAAAAACTGGTTTTTGGAACTCCAAGCCAATAATTCCCAATTGGGTTTTCCTTATTTCTTTGATTAGTCCTTTAGAGGGAGCCCTGAGAGCTTCAAGGCCTCATATTCATTATTTCTTTGATTAGCCCATCAGAGCGAGCCCTGAGCTTCAAGGCCTCATATTCCTGTGACCCAAATGAGCGATTGTGGGTTAACATGAGAGGAAGACCGTGAATCAAAGAAATTCACGCA_-_ATGCAGCAACCAGGTTTTGTTGTTTTGCTTTTTTTGGGCTTCCTTGTTGGACTTGCAGCAGCCCAATCAGGGTTTAAGAACAGGCTATCCGATGAAGAAGTAAACTACATTGCCCACAGGCAGCTGCTGTATTACAAGGATGAGTTTGGGGACAGAGGAGAAAGAGTGGCTGTAGATCCAAGGTTCAAGTTTCCGAATCCGAAGCTTAAAGATGCCTACATTGCTCTCCAGGCCTGGAAACAGGCTATACTCTCAGATCCATTGAACATAACTGGGGACTGGGTCGGTCCTAATGTCTGTAACTACACTGGTGTGTTTTGTTCTCCTCTACCGTACAACAAATCCATTGTGGTTGTAGCGGGCATTGATCTGAACCATGCAGACATTGCAGGGTATCTGCCTACGGAGCTTGGCCTGCTCACAGATCTGGCATTGTTCCATATCAATACTAACAGGTTCTGTGGTATTTTGCCTCACAGTTTCAAGAATATGACCCAGCTGTATGAGCTTGATATCAGTAATAACAGGTTTGCTGGGCCTTTCCCAAAGGTAGCTCTCCATCTGCCTTCACTGAAGTACCTGGACATCAGGTTCAATGAGTTCGAGGGAAAGCTGCCCACGAAGCTGTTTGACAAAGATCTTGATGCCATCTTTGTCAACAATAACAGGTTTCATCTTGAAATCCCTTCTAATCTTGGAAATTCTCCTGTTTCTGTTATTGTTTTCGCGAACAATAATCTCGGCGGATGCCTTCCTCCTAGTCTGGGAAACATGGCTGCCACTCTGGATGAGATCATACTCATGAATAGTAATCTGTCAGGCTGCCTGCCATCTGACATCACGCTCCTGAAAAACCTGACTGTCTTTGATGTGAGCTTCAATAAGCTAGTTGGGCCTCTGCCAGACAGCATTGGGAAGATGGTCAGATTGGAACAATTGGATGTTGCCCACAATATGTTAAGTGGCAATGTTCCCCAGAGCATCTGTGGGCTGCCCAATTTGGCAAATTTTACATACTCCTATAATTTCTTTACTGGAGAAGCACCCAATTGCCTGGCTCTTCCTAGAAGAGGAGCTACCTTCGATGACAAGAGGAATTGTATCCCTGGCAGGTCTGCTCAGACGGTCACGCCAGC

Fln Alignment:

sp_v1.1_unigene18576___ALQAWKQAILSDPLNITGDWVGPN---VCNYTGVFCSPLPYNKSIVVVAGIDLNHADIAGYLPTELGLLTDLALFHINTNRFCGILPHSFKNMTQLYELDIS-NNRFAGPFPKVALHLPSLKYLDIRFNEFEGKLPTKLFDK--DLDAIFVNNNRF-HLEIPSNLGN-SPVSVIVFANNNLGGCLPPSLGNMAATLDEIILMNSNLSGCLPSDITLLKNLTVFDVSFNKLVGPLPDSIGKMVRLEQLDVAHNMLSGNVPQSICGLPNLANFTYSYNFFTGEAP
C0PTA1_______________ALLAFKKAITYDPSRSLSNWTAQNSHNICSWYGVRCR--PHSRRVV---QIELSSSGLEGILSSSLGSLSFLKTLDLSANNLTGGIPPEFGRLKALRTLDLTFNEMLGGSVPKSLLNCTHLKWIGLANINLTGTIPTE-FGRLVELEHLDLSSNYYLSGSIPTSLGNCTSLSHLDLSNNSLSGHIPPTLGN-CISLSHLHLSENSLSGHIPPTLGNCTSLSHLDLSGNSLSGHIPPTLGKCISLSYIYLSGNSLSGHMPRTLGNLTQISHINLSFNNLSGVIP

SNPs (tot: 79)

Position	A %	C %	G %	T %	Probability
210		95	4		0.997494
213	95			4	0.997494
216		4	95		0.997494
220		95	4		0.997494
221	95	4			0.997494
222	90	4		4	0.9465
224			90	9	1.0
226		95	4		0.99692
228		93	4	2	0.985381
230		4		95	0.99692
231	95	4			0.99692
234		95	4		0.99692
235	95		4		0.99692
236		4		95	0.99692
238	95		4		0.99692
240		4		95	0.99692
241	4			95	0.99692
244	4			95	0.99692
513	80	20			0.999996
515			80	20	0.999996
516	80	20			0.999996
518	80			20	0.999996
519	80		20		0.999996
521		18	81		0.999994
522	72	27			1.0
523			81	18	0.999994
531	72	18	9		0.999994
532	18		81		0.999994
533	72	27			1.0
536	18	72		9	0.999994
639		22	77		0.999999
646	22			77	0.999999
654			18	81	0.999994
659	80	20			0.999996
660	90	10			0.90298
664		90	10		0.90298
665	90		10		0.90298
669		10	90		0.90298
670	10			90	0.90298
671		10	90		0.90298
673		20	80		0.999996
674	10			90	0.90298
803	90			10	0.90298
804	90		10		0.90298
813		10	90		0.90298
816		10		90	0.90298
817		90	10		0.90298
820	10			90	0.90298
821		10	90		0.90298
822		10	90		0.90298
824	90			10	0.90298
825			10	90	0.90298
826			10	90	0.90298
827		10		90	0.90298
837	10		90		0.90298
898	16			83	0.994512
912		83		16	0.994512
914	16	83			0.994512
917		83	16		0.994512
918	83		16		0.994512
922	16		83		0.994512
938		83		16	0.994512
946		83		16	0.994512
947	83	16			0.994512
1012		33		66	0.997452
1077	66		33		0.997452
1102		5	84	10	0.999846
1105		10	89		0.999919
1107		21		78	1.0
1108			78	10	0.999769
1110	10	78		10	0.999769
1112			10	89	0.999919
1113		89	10		0.999919
1116		88	11		0.999937
1117		88		11	0.999937
1118		11		88	0.999937
1120		11	88		0.999937
1123	11			88	0.999937
1364	87			12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain