SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18570

Length: 2486 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene18570
ATGGGGATCGTAGTGACCTTGGCTGTCATTCAAATTTTGGTAGCACTGAGGAATGGATCCCCCGATCTGAGAGAATGCTGTCAATTCTGAGGTCTATATATGAAATGCAGGTTTCTCAGCGTTTTGTTGGCGTGGCTATCTGCTGATTTAGAGCGCTTTCGTTTTGCCGCGCACTTGCCCCTACTTGGCTAATAATTTCTTCAGAACTTCGACAATGTCGGGTCCTCTCGACAGATTTGCTAGGCCGTGTTTTGAGGGATCTTCTGCTCAAGATGAAAGGAGAGAGAGGAAATCTGATGTGGAGAATTCTGAGGACGAGCGAAGAAAAACTAAAATTGGAGCTCTTAAAAAGAAAGCAATCAATGCCTCAACGAAGTTTCGGCACTCCTTAAAAAAAAGGAATCCTAGAAGGAAGGTTAATATAATTAAGGATGTACGAGATGCTGAGGAACAAGCGGCCGTCGATAACTTTCGTCAAGCACTTATTGCAGAAGACCTGCTGCCTCCCAGACACGATGATTATCATATGATGTTGAGATTCTTGAAAGCAAGGAAATTTGACATTGAGAAAACGAAGCAAATGTGGGCCGAGATGCTTCGTTGGAGAAAGGAGTATGGTGCTGATACTATCGAGGAGGATTTTGACTTCAAAGAGCTACATGAAGTTCTCAAGTACTATCCACAAGGTCATCATGGAGTAGACAAGGCTGGAAGACCAGTTTATATAGAGCAAATTGGCAAGGTTGATCCGATTAAACTGATGCAGGTTACAACTATTGAGAGATATCTGAAGTATCATGTTCAGGAATTTGAGAAGACTTTGAATGTTAAGTTCCCTGCCTGTTCCATTGCTGCAAAAAGTCACATCGATTCCACCACAACAATTTTGGATGTCCAGGGTGTGGGTCTAAAGAATTTCAATAAGTCTGCAAGAGAACTTATATTACGTATACAGAAAATTGACGGGGACAACTATCCTGAGACATTGTGTCAGATGTTCATCATCAATGCTGGTGCTGGTTTTAGATTGCTATGGAACACTATAAAAAGTTTCCTTGATCCAAAGACAACTGCAAAGATACATGTACTTGGAAATAAGTATCAGAGCAAGCTCTTAGAAGTCATTGATGCAAGCCAATTGCCTGAATTTTTGGGTGGCAACTGTGTATGTCCTGAAGGAGGGTGCCTTGCATCTGACAAGGGACCGTGGAAGGATCCAGAGATAATGAAGTTGGTGCATGGTGAAGCTAGATTTGCAAGGCAAATTGTGACCATAACCGTTGATGGGAAGACAATTTCGCATGGTAAACCACATTATACAAAGGCAAAGGGTGGTGATACATCTACTGCAGAGTCGGGGTCAGATGTAGATGATGTTGTCTCTCCTAAAGTACACAGGGGCCCTGGACTTTCTCGGTTAACTCCTGTTCATGAGGAAGGCAAGGTTGCTTGGCAAGCAAATTCCTCTGATGGATTTTCGGAGTATGAATCTGTTCCTATGGTCGACAAGGCTGTGGATATTAGTTGGAAACGAAAGTGTTATGGAGAAAATTTGCCGGTATCGAAAGATGTCTTCCTACCCGTAGATGATCTTAAAATACCCCAGGGGATCATTGTGCAGATTACGGCATTTTTTATGGCCTTCATTATGAGCATACTTGCTGTATTCAATTTTGCTACAGATGGCATCAAAAAGAAAGTGTCAAGTGGAAATAAGAATGCAGAGCTGAAGTCCAAGACCATAGCATATAATTATGAGACTGAGCCTACGGAGGAATCTCAGCATCCTACTACATGTGAGTTCACTGCTAAAGATGTTCTTCCATCTGTTCTAAAGCGTCTTCAGGAGTTGGAAGATAAGGTCAATGAGGTTAGTGCAAAGCCTCCTCAGATGCCAGAAGAAAAGGAGGAATTATTGAATGCTGCTACAAGCCGGATTCATGCTTTAGAAACTGAGCTGGAAGCAACAAAGAAGGCATTGAAGGAAGCACTTGCTAAACAGGAAGAGCTTATTGAATCCATGGAGAAAATGAAGGAACTTCAATTTCGTAAAAGGAGATTTTGTTGGTGAAGCATATTCTCTCAACTACAGTATCTGGTGTTTGATTTAAATGGCTTCTGCCCTTGTTTTACTTCTCCGAAGATTCTTTCAGCTTGATGATTTTGAAGTCACTATATTGACTTGAGAAGAGAAAGTTGTGATTGGACTTTGGAATGTGCGTGTGAAGTTTTTGGAATGTTGCAAAGTTAAAAATGGTTATTCTTTGGCGAATGTATAACCTGCATGAACTTTGACAAGTTGACAAGGACAAATTGTGGAGTTGCCTAACATAATAGCATGGTATATGTGTTTCCACTTTTACTTTTGGTGATGGTATTTTGTGAATGTAGACTGTTGAACACTGGGATTGACATTGTTAATTGAGTTGTGGCTATTTTCAAGTCTATTTTGATTTAATTTTGTATGGTAAATATTATGGTTAAAT

Ace file of the UniGene sp_v1.1_unigene18570

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphatidylinositol transporter, putative n=1 Tax=Ricinus communis RepID=B9RH84_RICCO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	like phosphatidylinositol transfer protein	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	75%
Blast2go	phosphatidylinositol transporter activity	GO:0008526	Molecular Function	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQR7

Fln msg:

Fln protein: MSGPLDRFARPCFEGSSAQDERRERKSDVENSEDERRKTKIGALKKKAINASTKFRHSLKKRNPRRKVNIIKDVRDAEEQAAVDNFRQALIAEDLLPPRHDDYHMMLRFLKARKFDIEKTKQMWAEMLRWRKEYGADTIEEDFDFKELHEVLKYYPQGHHGVDKAGRPVYIEQIGKVDPIKLMQVTTIERYLKYHVQEFEKTLNVKFPACSIAAKSHIDSTTTILDVQGVGLKNFNKSARELILRIQKIDGDNYPETLCQMFIINAGAGFRLLWNTIKSFLDPKTTAKIHVLGNKYQSKLLEVIDASQLPEFLGGNCVCPEGGCLASDKGPWKDPEIMKLVHGEARFARQIVTITVDGKTISHGKPHYTKAKGGDTSTAESGSDVDDVVSPKVHRGPGLSRLTPVHEEGKVAWQANSSDGFSEYESVPMVDKAVDISWKRKCYGENLPVSKDVFLPVDDLKIPQGIIVQITAFFMAFIMSILAVFNFATDGIKKKVSSGNKNAELKSKTIAYNYETEPTEESQHPTTCEFTAKDVLPSVLKRLQELEDKVNEVSAKPPQMPEEKEELLNAATSRIHALETELEATKKALKEALAKQEELIESMEKMKELQFRKRRFCW*

Protein Length: 620

Fln nts: ATGGGGATCGTAGTGACCTTGGCTGTCATTCAAATTTTGGTAGCACTGAGGAATGGATCCCCCGATCTGAGAGAATGCTGTCAATTCTGAGGTCTATATATGAAATGCAGGTTTCTCAGCGTTTTGTTGGCGTGGCTATCTGCTGATTTAGAGCGCTTTCGTTTTGCCGCGCACTTGCCCCTACTTGGCTAATAATTTCTTCAGAACTTCGACA_-_ATGTCGGGTCCTCTCGACAGATTTGCTAGGCCGTGTTTTGAGGGATCTTCTGCTCAAGATGAAAGGAGAGAGAGGAAATCTGATGTGGAGAATTCTGAGGACGAGCGAAGAAAAACTAAAATTGGAGCTCTTAAAAAGAAAGCAATCAATGCCTCAACGAAGTTTCGGCACTCCTTAAAAAAAAGGAATCCTAGAAGGAAGGTTAATATAATTAAGGATGTACGAGATGCTGAGGAACAAGCGGCCGTCGATAACTTTCGTCAAGCACTTATTGCAGAAGACCTGCTGCCTCCCAGACACGATGATTATCATATGATGTTGAGATTCTTGAAAGCAAGGAAATTTGACATTGAGAAAACGAAGCAAATGTGGGCCGAGATGCTTCGTTGGAGAAAGGAGTATGGTGCTGATACTATCGAGGAGGATTTTGACTTCAAAGAGCTACATGAAGTTCTCAAGTACTATCCACAAGGTCATCATGGAGTAGACAAGGCTGGAAGACCAGTTTATATAGAGCAAATTGGCAAGGTTGATCCGATTAAACTGATGCAGGTTACAACTATTGAGAGATATCTGAAGTATCATGTTCAGGAATTTGAGAAGACTTTGAATGTTAAGTTCCCTGCCTGTTCCATTGCTGCAAAAAGTCACATCGATTCCACCACAACAATTTTGGATGTCCAGGGTGTGGGTCTAAAGAATTTCAATAAGTCTGCAAGAGAACTTATATTACGTATACAGAAAATTGACGGGGACAACTATCCTGAGACATTGTGTCAGATGTTCATCATCAATGCTGGTGCTGGTTTTAGATTGCTATGGAACACTATAAAAAGTTTCCTTGATCCAAAGACAACTGCAAAGATACATGTACTTGGAAATAAGTATCAGAGCAAGCTCTTAGAAGTCATTGATGCAAGCCAATTGCCTGAATTTTTGGGTGGCAACTGTGTATGTCCTGAAGGAGGGTGCCTTGCATCTGACAAGGGACCGTGGAAGGATCCAGAGATAATGAAGTTGGTGCATGGTGAAGCTAGATTTGCAAGGCAAATTGTGACCATAACCGTTGATGGGAAGACAATTTCGCATGGTAAACCACATTATACAAAGGCAAAGGGTGGTGATACATCTACTGCAGAGTCGGGGTCAGATGTAGATGATGTTGTCTCTCCTAAAGTACACAGGGGCCCTGGACTTTCTCGGTTAACTCCTGTTCATGAGGAAGGCAAGGTTGCTTGGCAAGCAAATTCCTCTGATGGATTTTCGGAGTATGAATCTGTTCCTATGGTCGACAAGGCTGTGGATATTAGTTGGAAACGAAAGTGTTATGGAGAAAATTTGCCGGTATCGAAAGATGTCTTCCTACCCGTAGATGATCTTAAAATACCCCAGGGGATCATTGTGCAGATTACGGCATTTTTTATGGCCTTCATTATGAGCATACTTGCTGTATTCAATTTTGCTACAGATGGCATCAAAAAGAAAGTGTCAAGTGGAAATAAGAATGCAGAGCTGAAGTCCAAGACCATAGCATATAATTATGAGACTGAGCCTACGGAGGAATCTCAGCATCCTACTACATGTGAGTTCACTGCTAAAGATGTTCTTCCATCTGTTCTAAAGCGTCTTCAGGAGTTGGAAGATAAGGTCAATGAGGTTAGTGCAAAGCCTCCTCAGATGCCAGAAGAAAAGGAGGAATTATTGAATGCTGCTACAAGCCGGATTCATGCTTTAGAAACTGAGCTGGAAGCAACAAAGAAGGCATTGAAGGAAGCACTTGCTAAACAGGAAGAGCTTATTGAATCCATGGAGAAAATGAAGGAACTTCAATTTCGTAAAAGGAGATTTTGTTGGTGA___AGCATATTCTCTCAACTACAGTATCTGGTGTTTGATTTAAATGGCTTCTGCCCTTGTTTTACTTCTCCGAAGATTCTTTCAGCTTGATGATTTTGAAGTCACTATATTGACTTGAGAAGAGAAAGTTGTGATTGGACTTTGGAATGTGCGTGTGAAGTTTTTGGAATGTTGCAAAGTTAAAAATGGTTATTCTTTGGCGAATGTATAACCTGCATGAACTTTGACAAGTTGACAAGGACAAATTGTGGAGTTGCCTAACATAATAGCATGGTATATGTGTTTCCACTTTTACTTTTGGTGATGGTATTTTGTGAATGTAGACTGTTGAACACTGGGATTGACATTGTTAATTGAGTTGTGGCTATTTTCAAGTCTATTTTGATTTAATTTTGTATGGTAAATATTATGGTTAAAT

Fln Alignment:

sp_v1.1_unigene18570___MSGPLDRFARPCFEGSSAQDERRERKSDVENSEDERRKTKIGALKKKAINASTKFRHSLKKRNPRRKVNIIKDVRDAEEQAAVDNFRQALIAEDLLPPRHDDYHMMLRFLKARKFDIEKTKQMWAEMLRWRKEYGADTIEEDFDFKELHEVLKYYPQGHHGVDKAGRPVYIEQIGKVDPIKLMQVTTIERYLKYHVQEFEKTLNVKFPACSIAAKSHIDSTTTILDVQGVGLKNFNKSARELILRIQKIDGDNYPETLCQMFIINAGAGFRLLWNTIKSFLDPKTTAKIHVLGNKYQSKLLEVIDASQLPEFLGGNCVC-PEGGCLASDKGPWKDPEIMKLVHGEARFARQIVTITVDGKTISHGKPHYTKAKGGDTSTAESGSDVDDVVSPKVHRGPGLSRLTPVHEEGKVAWQANSSDGFSEYESVPMVDKAVDISWKRKCYGENLPVSKDVFLPVDDLKIPQGIIVQITAFFMAFIMSILAVFNFATDGIKKKVSSGNKN-AELKSKTIAYNYETEPTEESQHP-TTCEFTAKDVLPSVLKRLQELEDKVNEVSAKPPQMPEEKEELLNAATSRIHXXXXXXXXXXXXXXXXXXXXXXXIESMEKMKELQFRKRRFCW
B8LQR7_______________MSGPLDRFARPCFEGSSAQDERRERKSDVENSEDERRRTKIGALKKKAINASTKFRHSLKKRNPRRKVNIIQDVRDAEEQAAVDNFRQALIAEDLLPPRHDDYHMMLRFLKARKFDIEKTKYMWAEMLRWRKEYGADTIEEDFDFKELPEVLKYYPQGHHGVDKEGRPVYIERLGKVDPIKLMQVTTIERYLKYHVQEFEKTFNVKFPACSIAAKKHIDSTTTILDVQGVGLKNFNKSARELILRIQKIDGDNYPETLCQMFIINAGTGFRLLWNTIKTFLDPKTTAKIHVLGNKYQSKLLEVIDASQLPEFLGGNCVCGEEGGCLSSDKGPWKDPEIMKLVHGEARFARQIVTVTVDGKTISHGKPHYTKAKGGDTSTAESGSDVDDVVSPKVYRGPGLARLTPVHEEGKVAWQANSSDGFLEYESVPMVDKAVDIGWKRKVYGENLPVSKDIFLPVDDLKTPQGIIVQITAFFMAFIMSIFAVFTFATDGIKKKVSSGKMNAAELKSKTIAYNYDTEPKEESQHPMPTSEFSDKDVLSSVLKRLQDLEDKVNEVSTNPPQMPEEKEELLNAATSRIHALETELEATKKALKEALDKQEELIESMEQMKEAQFRKRRFCW

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
235	50			50	1.0
236		50	50		1.0
238		50	50		1.0
239	50	50			1.0
242			50	50	1.0
246	50		50		1.0
247			50	50	1.0
248		50	50		1.0
251	50		50		1.0
358	90			10	0.90298
359	90		10		0.90298
371		90		10	0.90298
456	10	90			0.90298
864	77	5			1.0
2094	76		24		1.0
2096	76			23	1.0
2100		23		76	1.0
2102	19			76	1.0
2458	16			16	0.988813

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain