SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18565

Length: 1822 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18565

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calreticulin n=2 Tax=Pinaceae RepID=Q9FYV2_PINTA	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	calreticulin 2	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	90%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	90%
Blast2go	response to salt stress	GO:0009651	Biological Process	90%
Blast2go	sugar binding	GO:0005529	Molecular Function	90%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	90%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	90%
Blast2go	vacuole	GO:0005773	Cellular Component	90%
Blast2go	endoplasmic reticulum lumen	GO:0005788	Cellular Component	90%
Blast2go	mitochondrion	GO:0005739	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Blast2go	Calreticulin/calnexin	IPR001580	-	90%
Blast2go	Concanavalin A-like lectin/glucanase	IPR008985	-	90%
Blast2go	Calreticulin/calnexin, P	IPR009033	-	90%
Blast2go	Calreticulin	IPR009169	-	90%
Blast2go	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	90%
Blast2go	Calreticulin/calnexin, conserved site	IPR018124	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LP55

Fln msg: your sequence is longer than subject: 435 - 401

Fln protein: MRVKCNIMFAAFGRFIYRGKSTLIVIEPKPLTMASGGLVKLALLLICCASISSAHVYLEERFNDGWENRWVISDWKKDEGASGDWLHTAGKWNGDPEDKGIQTHPDARFFAISAEFPEFNNKDKTLVLQFSVKHEQKLDCGGGYVKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILGHGGKNHPIKKDVSCETDQLTHVYTFILRPDATYSILIDNKEKDSGSLYTEWDILPPKQIKDPDAKKPEDWEDKEYIPDPEDKKPEGYDDIPQEIPDSDATKPEDWDDEEDGEWKAPTIPNPEYKGPWKPKKIKNPKYKGKWVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVCDDPEYAKKLAEETWGKHKDAEKEAFEAEEKKKDEEEESKDSDDEDVSDEAEEPEEDEDNEEHDEL*

Protein Length: 436

Fln nts: ATGGGGACCTTGAATATTGAAAGGGTGGATAAAATAACAACCACCTGCTAAAAAAAATCCCAGACCCCACGCTCCTTGATTCCACGGACGACTTACACGATCTTTAACCCCGAGCTCCTAGGATCTCAGCGGACGCCAA_-_ATGAGAGTTAAATGCAACATAATGTTTGCTGCATTTGGACGTTTTATATACAGGGGGAAGTCGACCCTCATTGTGATCGAACCCAAACCCTTGACAATGGCTTCTGGAGGATTGGTCAAGCTGGCCCTCCTGCTCATATGCTGTGCTTCGATATCCTCCGCTCATGTTTATCTCGAAGAGCGATTCAACGATGGATGGGAAAATCGTTGGGTGATATCCGATTGGAAGAAGGATGAGGGTGCATCAGGGGACTGGCTTCACACTGCTGGAAAATGGAATGGGGACCCCGAAGACAAAGGGATTCAAACTCATCCAGATGCACGTTTCTTCGCCATTTCGGCTGAGTTTCCAGAGTTTAACAACAAGGATAAGACACTTGTTCTTCAATTTTCTGTCAAGCATGAGCAGAAACTTGACTGCGGTGGTGGATATGTGAAGCTATTGAGTGGTGATGTTGACCAAAAGAAGTTTGGTGGAGATACACCTTACAGTATCATGTTTGGTCCAGACATATGTGGTTATAGTACAAAGAAGGTTCATGCAATTCTTGGTCATGGTGGAAAGAACCATCCTATTAAGAAGGATGTATCATGTGAAACGGATCAGCTTACTCATGTTTATACTTTTATTCTTCGCCCTGATGCTACCTACAGCATTCTCATTGATAATAAGGAGAAAGATTCTGGAAGTTTATACACCGAATGGGATATTTTGCCACCAAAACAAATTAAGGATCCTGATGCCAAAAAGCCAGAAGACTGGGAAGACAAAGAATACATTCCTGATCCAGAAGACAAAAAGCCTGAGGGATATGATGACATTCCGCAGGAAATTCCAGATTCAGATGCCACAAAGCCAGAGGACTGGGACGATGAGGAGGATGGGGAGTGGAAAGCTCCAACCATTCCGAATCCAGAGTACAAAGGACCCTGGAAGCCAAAGAAAATCAAGAATCCAAAGTACAAGGGAAAATGGGTTGCACCAATGATTGACAATCCAGATTTTAAGGATGATCCGGAACTTTATGTTTTCCCCAGTCTGAAATACTTAGGAATCGAACTATGGCAGGTGAAATCAGGAACATTATTTGATAACATTTTAGTATGTGATGATCCTGAATATGCGAAGAAGTTGGCAGAGGAGACATGGGGAAAACACAAGGATGCTGAAAAGGAAGCTTTTGAAGCAGAAGAAAAAAAGAAAGATGAGGAGGAGGAATCTAAGGATTCTGATGATGAGGACGTATCTGACGAGGCTGAAGAGCCAGAAGAGGACGAGGATAATGAAGAGCATGACGAGTTGTAG___GTGATAGGCATTACCCGGAACCTAGTTTGGGTGCAAGTGCTAACAATAATTCAAATGCTGTTGCTAGCTTAGTGAGAAATTATAACATGCTGCTAGTGTATTTGATGTCCAAAATGTTTTGGAACAAACTTGAGTTGATTTATATCAGGTCTTTTCCTGAAGGGGACGCATCAATTTTTCAGGGACTTAAGTTCAAATTAATCTGTTAACCAATGAAAACATTTATATTCCGAGAATTTTTCAGTAGAAATCAATTTGGAAAGCTATTTGATATTTGTTATTTTGCAATTCTGAAACTGATTTGTAAACGCTTTACAATATGATTGTCTATCGTTTGTTTGTTTCATAGTGAATGCAATTCTCTATTTCTCaATAAAT

Fln Alignment:

sp_v1.1_unigene18565___MASGGLVKLALLLICCASISSAHVYLEERFNDGWENRWVISDWKKDEGASGDWLHTAGKWNGDPEDKGIQTHPDARFFAISAEFPEFNNKDKTLVLQFSVKHEQKLDCGGGYVKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILGHGGKNHPIKKDVSCETDQLTHVYTFILRPDATYSILIDNKEKDSGSLYTEWDILPPKQIKDPDAKKPEDWEDKEYIPDPEDKKPEGYDDIPQEIPDSDATKPXXXXXXXXXXXKAPTIPNPEXXXXXXXXXXXXXXXXXXXVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVCDDPEYAKKLAEETWGKH
B8LP55_______________MASGGLVKLGLLLICFASISSAHVYLDERFDDGWENRWVISDWKKDEGAAGEWLHTAGKWNGDPDDKGIQTHPDARFFAISAEFPEFNNKDKTLVLQFSVKHEQKLDCGGGYVKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILGHGGKNLPIKKDVSCETDQLTHVYTFILHPDATYSILIDNKEKDSGSLYTDWDILPPKQIKDPNAKKPEDWEDKEYIPDPEDKKPEGYDDIPEEIPDSDATKPEDWDDEEDGEWKAPTIPNPEYKGPWKPKKIKNPKYKGKWVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVSDDPEYAKKVAEETWGKH

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
420		80		20	0.995493
452	87		12		0.999964
456	87			12	0.999964
458	87	12			0.999964
461		87		12	0.999964
464			87	12	0.999964
841			85	14	0.993533
842	85			14	0.993533
845		14	85		0.993533
847		14	85		0.993533
849			14	85	0.993533
850	66			16	0.988813
851			16	66	0.988813
852	16			83	0.994512
853			16	83	0.994512
856	16	83			0.994512
857		83	16		0.994512
859		83	16		0.994512
861	80		20		0.995493
862	80			20	0.995493
863	60	40			1.0
864	60			40	1.0
865		80		20	0.995493
866	60	20		20	0.99255
867	33		66		1.0
869			33	66	1.0
871	33	33	33		0.997753
872	33		66		1.0
874	33		33	33	0.997753
1720	6			93	0.999264
1721	3	6		89	0.998304
1773		13		86	1.0
1796		14		85	0.993533
1803	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain