SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18555

Length: 1562 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18555

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Remorin, putative n=1 Tax=Ricinus communis RepID=B9SUF4_RICCO	-	-	1.0e-21	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	remorin family protein	-	-	0.0	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Remorin, C-terminal	IPR005516	-	0.0	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQK7

Fln msg: your sequence is shorter than subject: 442 - 536

Fln protein: PVTTSPALSPHNINGSKSVRCRCNREFADSRTEGSIVLYNENPTRGKEPVEASVGPSSARSDKASFGVLAANLSSNRESKPISENPEEESDSGVREIHVALERPRAAASNETRRSAQRRQHNWSDTSMGSFVSSDSESISLSTEFNNVLAAAAAATTNSSAQAVDSNSLINLLNENSTARSPARRGTRLPGIGEEEPSRSTSDDAGDRNEGDANNGRRDNMALVPTSTTTTEGNREQRNAGRDYFALVPVDGAPESTGSTSDRDAPTSSWDAQHNEGAIVESGNANAENTANNRAFGSSSSSLRSGNENRVPTPKQLALQKEVTLQKVKKDKIEAKAVAWEEAKMAKVDNRFKREETIIEAWENEQKVKASIKMKKVERKLEERRAKALEEMQNEIALAHRKAENRRAVAEARRGAAKAKISEIADKIRSIGKLPKKFLFL*

Protein Length: 443

Fln nts: CCTGTCACCACTTCGCCTGCTCTGTCGCCTCATAACATAAATGGAAGCAAATCAGTTCGGTGTCGCTGCAATAGGGAATTTGCAGATTCAAGAACTGAGGGCTCAATTGTTCTATACAATGAAAATCCGACGCGAGGAAAAGAACCAGTGGAAGCATCAGTTGGGCCGTCCTCGGCGAGGTCTGATAAGGCCTCGTTTGGTGTATTGGCTGCTAATTTGTCTTCTAATAGAGAGAGCAAGCCCATTTCAGAGAATCCAGAAGAAGAGAGCGATTCAGGAGTCCGGGAAATTCATGTCGCATTGGAGCGGCCGAGAGCAGCAGCGAGCAATGAAACGAGACGATCTGCTCAGCGTCGTCAACACAACTGGTCTGATACTTCCATGGGGTCTTTCGTATCTAGCGACAGCGAAAGTATAAGCTTGAGCACAGAATTTAACAACGTTCTCGCAGCGGCTGCAGCAGCTACGACTAATTCCAGTGCCCAGGCTGTGGATTCTAATAGTTTGATCAATTTATTGAACGAAAATTCAACTGCCAGGTCTCCTGCGAGGAGGGGCACTCGTTTGCCTGGTATCGGAGAAGAAGAACCCAGCAGGAGCACCAGTGACGATGCCGGGGATCGAAACGAGGGCGATGCGAATAATGGTAGAAGGGATAACATGGCTCTGGTACCTACCAGTACCACGACTACGGAAGGAAATCGAGAGCAGAGAAATGCAGGGAGAGATTACTTCGCGCTTGTTCCCGTGGATGGAGCCCCTGAATCAACAGGTTCCACTTCAGATAGGGACGCTCCAACAAGCTCCTGGGACGCCCAGCATAACGAGGGAGCCATTGTGGAAAGTGGAAATGCTAATGCCGAAAACACTGCGAACAACAGAGCATTTGGCTCGTCTTCTTCCTCGCTGAGAAGTGGTAATGAGAACCGTGTGCCCACTCCAAAGCAACTCGCTCTACAGAAAGAGGTCACTTTACAGAAGGTCAAGAAAGACAAAATAGAAGCCAAGGCCGTCGCTTGGGAAGAAGCGAAGATGGCCAAAGTTGATAACAGATTCAAGAGGGAGGAAACCATTATCGAGGCTTGGGAGAACGAGCAGAAAGTGAAAGCTAGCATCAAAATGAAAAAAGTCGAGAGAAAATTGGAGGAAAGGAGGGCCAAGGCACTTGAGGAAATGCAGAATGAGATCGCTTTAGCTCACAGGAAAGCAGAGAACAGGAGAGCTGTCGCCGAGGCTAGAAGAGGTGCTGCAAAAGCCAAGATATCAGAAATTGCTGACAAAATACGCTCGATTGGAAAGCTCCCCAAAAAATTTCTCTTCTTGTAG___AAATCCATTGCTATAAAAATTCTCTTCTTCTAGAAATTTACTACTAGTACAGCATTCAATTCTATGCCACAGTATTCAACTTTTACAGGCTGAGTATTATTTATTTGGAACGTTTACTAATAGTAAAGCATTCAATTCTATGCTACAGTATTCAACTTTTATAGGCTGAGTATTGTTTATTTGGAAGGTGACTATTTAGCTTGGAATCGCAGAGGATATGAAAAGAAAGACAGTTT

Fln Alignment:

sp_v1.1_unigene18555___PVTTSPALSPHNINGSKSVRCRCNREFADSRTEGSIVLYNENPTRGKEPVEASVG-----PSSARSDKASFGVLAANLSSNRESKPISENPEEESDSGVREIHVALERPRAAA-SNETRRSAQRRQHNWSDTSMGXXXXXXXXXXXXXTEFNNVLXXXXXXXXXXXXXXVDXXXXXXXXXXXXTARSPARRGTRLPGIGEEEPSRSTSDDAGDRNEGDANNG--RRDNMALVPTSTTTTEGNREQRNAGRDYFALVPVDGAPESTGSTSDRDAPTSSWDAQHNEGAIVESGXXXXXXXXXXXXFGXXXXXLRSGNENRVPTPKQLALQKEVTLQKVKKDKIEAKAVAWEEAKMAKVDNRFKREETIIEAWENEQKVKASIKMKKVERKLEERRAKALEEMQNEIALAHXXXXXXXXXXXXXXXXXXXXISEIADKIRSIG
B8LQK7_______________PVTTSPALSPHQINGSRSVRCRGNRQYADSSTEGSIVLYNGNQSRGKEPLEASAGVAGSGPSSARSDNASFGVLPANLSSNRESKPISENPEEEND-GVRDIHVTLERTRAAAASNETRRSAQRRQHNWSDTSMGSFVSSDTESISLSTEFNNVLAAAAAATSNSSAQALDSTSLINLLNENSSARSPAVRSTRLPGIGEEEPTRSTSEEAGDRNEGDANNGNGRRDNMALVPTSTTAAEGNREQRNAGRDYFALVPIDGAPESTGSTSDRDAPQSSWDAQHNEGAIVESGNANGDNTDNRG-FGSSTSSIRSGNENRLPTTKQLALQKEVTLQKVKKDKIEAKAVAWEEAKLAKVDNRFKREETIIEAWENEQKVKANIKMKKVERKLEEKRATAFEKMQNEIAKSHRKAENRRAVAEARRGSAKAKIAEVADKIRSLG

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
131		50		50	1.0
297		40	60		1.0
432	75			25	0.996473
744		66		33	0.997452
747		66		33	0.997452
927		12		87	0.992554
1115		14		85	0.993533
1395	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain