SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18544

Length: 1058 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18544

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T413_RICCO	-	-	8.0e-11	29%
FL-Next	tr=DNA binding protein, putative; Ricinus communis (Castor bean).	-	-	0.0	29%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9T413

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 236 aas, your sequence is shorter than subject: 288 - 535

Fln protein: MDYKTVNNFQAGMLSSHQLRMTVPLEVQRESKNIEVDELAVVEKPSHKAGRSPATTNCGKDSFTELPCDKILVSNMVPQNMASFKDVQVKESHRLHLKVQNLSKPTIAQLGYQGNYNHVQAMRPFEDDCFDYGSGHENAINSFEFHKGNRAFHRSVSGSHSKQVPSKWDDAEKWLVSHSSADGPVKNKLKTVAVQSQVNTARYSRKGSSSHQMDCQMNVTKVELPNATVILSSHVAVDGSGLYQDEGETKKIDSKVSLVKTVRNPVAEDSNYCLDHHPIKDTSRTST*

Protein Length: 289

Fln nts: ACTGCTGCGTTTGAGCTAATATGCAGTGAAACCTAGGTATTTATGTAATGTGGAGCAAAATGGTGGCAGAGCCTCGTACAGAATTTTCAGTGACAATGTAGCCAAAACCATGCAAGTCACTCATATTTCTATGAAGGGAAGCTGTAAGAAGTA_-_ATGGATTACAAAACAGTGAACAATTTTCAGGCTGGAATGCTATCCTCTCATCAATTAAGGATGACTGTTCCTCTTGAGGTGCAAAGAGAAAGCAAAAATATAGAAGTGGATGAGCTAGCAGTTGTTGAAAAGCCCAGTCACAAAGCTGGACGCTCACCAGCAACAACAAATTGTGGAAAAGACTCCTTCACAGAGCTCCCATGTGATAAGATTCTAGTTTCAAATATGGTACCTCAAAACATGGCTTCTTTCAAAGATGTCCAAGTTAAAGAAAGCCATCGACTTCATCTGAAAGTGCAGAATCTGTCAAAGCCTACGATTGCACAGTTAGGGTATCAAGGTAATTATAATCATGTACAAGCAATGCGACCCTTTGAAGATGATTGTTTCGATTATGGTAGTGGTCATGAAAATGCCATCAATAGTTTTGAGTTTCACAAGGGGAATAGGGCATTTCACAGGTCTGTCTCAGGGTCACATTCCAAACAAGTACCTTCTAAATGGGATGATGCAGAAAAATGGCTGGTTAGTCATTCTTCTGCAGATGGTCCTGTCAAAAATAAATTAAAAACCGTTGCAGTTCAATCCCAAGTCAATACTGCACGTTATTCAAGAAAGGGAAGCAGTTCTCATCAAATGGACTGCCAGATGAATGTTACGAAGGTTGAATTACCAAATGCTACGGTCATATTATCCAGCCACGTGGCCGTTGATGGAAGTGGCTTGTATCAGGATGAAGGGGAGACAAAGAAAATTGATTCAAAGGTTTCCCTTGTGAAAACCGTCAGAAATCCTGTGGCAGAAGATTCAAATTACTGTCTGGATCACCATCCTATAAAGGACACTTCCAGAACGTCCACATGACTTAAAGAAAGTCAATGATACTGAACCGTTCTTTCGGGCTT

Fln Alignment:

sp_v1.1_unigene18544___MDYKTVNNFQAGMLSSHQLRMTV--PLEVQRE------SKNIEVDELAVVEKPSHKAGRSPATTNCGKDSFTELPCDKILVSNMVPQNMASFKDVQVKESHRL-HLKVQNLSKPTIAQLGYQGNYNHVQAMRPFEDDCFDYGSGHENAINSFEFHKGNRAFHRSVSGSHSKQVPSKWDDAEKWLVSHSSADGPVKNKLKTVAVQSQVN
B9T413_______________MEYERIHKVQTGMISPTKLRMKLLGPHHNRKKDGSNCNSSRTSPSRLEDTEFVKNSLLASNDEEVAAPSLDLSVPDGAVVDPSQVDQTSSQLKDTLSKENGNMGRFKMQQFTK------GESANSSAVHPMRSLEDDNLDYDSNASSS--SFEFHK-ERAAHNQFTRSFSRPMPSKWNDAEKWIMNRQNMR---PNFSKKNAVYNQAN

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
581			33	66	0.997452
582			33	66	0.997452
583			33	66	0.997452
731			87	12	0.992554
787	20			80	0.995493
853		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain