SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18542

Length: 2465 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene18542
CGTGTGGAAACTTCGCGATACAGAGCGGAGAGAAATATCGAGAAATCCAGAGACTTCTTACGGACACGTGTCTATTCATGGCGGTTTATCCTTGTACCGACTTGCATGCTTAAAAGGACCCTCAATCCAACCCTCTTGCAATTCAGTTCGACAGCGTTGTTTTGCTAAGTGAGCAAGGAATACAGAACGTCTTGTTTCAATTTTCTTGTGTATTCGTGTGGTTTGTTTTGATTCTGCTGTGATTTGAAGTTCTGACGATGGCTAGTAGCGAAGGGAAGGCGATTGGAATCGATCTGGGAACAACCTACAGTTGCGTGGGTGTTTGGCACCACGACCGTGTGGAAATAATTCCCAATGATCAAGGTAACAGAACGACTCCTTCCTATGTTGCTTTTACTGATACCGAGCGTCTAATTGGGGACGCTGCCAAGAATCAAGTGGCCATGAATCCCCAGAACACGGTCTTTGACGCTAAAAGATTGATCGGCAGGCGCTTCAGCGATGCCCCTGTGCAAAACGACATGAAGCTCTGGCCTTTTAAAGTATTACCTGGCCCTGGGGATAAGCCTATGATTGAGGTCAGCTACAAAGGCGAGAAGAAGCAATTCTCTCCGGAAGAAATTTCGTCTATGGTCCTTTCCAAGATGAGGGAGATTGCAGAGGCTTTTCTTGGTCAGAGTGTAAAGAATGCTGTGGTTACTGTTCCTGCCTATTTCAATGACTCGCAGAGGCAGGCGACCAAGGATGCTGGTCTCATTGCTGGCTTAAATGTGTTGAGGATTATTAATGAGCCTACAGCTGCTGCCATTGCTTATGGGCTCGACAAGAAGGCCAGTTCTACTAGAGAAAAGAATGTGCTCATCTTTGATTTGGGAGGAGGAACGTTCGATGTCTCAATTCTGACTATTGAAGAGGGAATCTTCGAAGTGAAGGCCACCGCCGGAGATACTCACTTGGGAGGCGAGGATTTTGATAACAGAATGGTGAATCACTTTGTGCAGGAATTCAAAAGAAAGCACAGAAAAGACATCAGCGGGAATGCCAGAGCTCTTCGCAGGCTGAGAACAGCATGTGAGAGGGCAAAAAGAACGCTCTCTTCTACTACACAGACAACGATTGAGATTGATTCTCTATATGAAGGAATTGATTTTTACGCCACAATTACTCGAGCCCGCTTCGAGGAACTCAACATGGATCTGTTCAGGAGAAGTATGGAGCCTGTGGAGAAATGTATGCGAGATGCTAAGATGGACAAGAGCCAAATAGATGATGTTGTCTTGGTCGGGGGTTCGACTCGTATCCCGAAAGTACAACAATTGCTCCAAGATTTCTTCAATGGCAAAGAGCTTTGTAAGAGCATTAACCCAGACGAAGCCGTGGCATATGGTGCAGCTGTGCAGGCTGCCATTCTGAGCGGCGAAGGCAACGAGAAGGTGCAGGACCTGCTGTTGCTAGATGTCACTCCATTAAGTCTGGGGTTGGAAACAGCGGGAGGTGTAATGACAGTATTAATACCGAGGAACACCACCATTCCCACCAAGAAGGAGCAGATTTTCTCAACTTACTCAGATAATCAGCCTGGGGTTTTAATTCAAGTATATGAAGGTGAGCGAGCGCGGACGAAGGACAATAACCTGCTCGGCAAATTCGAGCTCACAGGAATTCCGCCGGCTCCTAGAGGTGTCCCGCAGATTAATGTCTGCTTTGACATAGATGCAAACGGCATCCTCAACGTTTCTGCTGAAGACAAGACTGCGGGAGTGAAGAACAAGATTACTATCACAAACGACAAGGGTCGGTTGAGCAAAGAAGAGATCGAGAAAATGGTGCACGATGCGGAGAAGTACAAGGCCGAGGATGAGGAGGTCAAGAAGAAGGTTGATGCCAAGAATGCCCTCGAGAACTATGCCTACAATATGCGAAACACCATCCGAGACGAGAAGTTTGCCGGTAAATTAGATCCGGCAGACAAATCCAAGATCGAGGAGGCTATTAATGGTGCCATCAGCTGGCTTGATCAGAACCAGTTGGCCGAGGTTGATGAGTTTGAAGACAAGACGAAAGAACTGGAGGGCATCTGCAATCCTATCATTGCTAAAATGTATCAGGGGGGAGCTGCTCCAATGGGAGGTGAAGATGATGATATTCCCACTGCTGGTGGTGCTGGTGCTGGTGCTGGTTCTGGTTCTGGTGGCCGAGGCCCCAAGATCGAAGAAGTAGATTAAATTGTTAATGTTCTTTCACTTTTTATTTTCTAGTATGTAAATTTTTCTACTATATATTTAGGTAGATCTGTAGAGATATAGGTATGTCTTAGATTGAGGGTTCAGTGGCATTTTTCTTTAAAATGCATTTCGAGAGATGTTTATGTGAAACTGCAATATTGCATTCTGAAGATAGGTGTATTGTCACCTTCTTTGTGTGTGTAAAAATGGTTGAGTTTTATAATACTGAATAATTTTTCT

Ace file of the UniGene sp_v1.1_unigene18542

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock 70 kDa protein n=3 Tax=rosids RepID=HSP70_SOYBN	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	heat shock	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	91%
Blast2go	response to stress	GO:0006950	Biological Process	91%
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	91%
Blast2go	ATP binding	GO:0005524	Molecular Function	91%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	91%

Source	InterPros	Term	Type	Identity
Blast2go	Heat shock protein Hsp70	IPR001023	-	91%
Blast2go	Heat shock protein 70	IPR013126	-	91%
Blast2go	Heat shock protein 70, conserved site	IPR018181	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXU2

Fln msg:

Fln protein: MASSEGKAIGIDLGTTYSCVGVWHHDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDAPVQNDMKLWPFKVLPGPGDKPMIEVSYKGEKKQFSPEEISSMVLSKMREIAEAFLGQSVKNAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDKKASSTREKNVLIFDLGGGTFDVSILTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHRKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRRSMEPVEKCMRDAKMDKSQIDDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKEEIEKMVHDAEKYKAEDEEVKKKVDAKNALENYAYNMRNTIRDEKFAGKLDPADKSKIEEAINGAISWLDQNQLAEVDEFEDKTKELEGICNPIIAKMYQGGAAPMGGEDDDIPTAGGAGAGAGSGSGGRGPKIEEVD*

Protein Length: 657

Fln nts: CGTGTGGAAACTTCGCGATACAGAGCGGAGAGAAATATCGAGAAATCCAGAGACTTCTTACGGACACGTGTCTATTCATGGCGGTTTATCCTTGTACCGACTTGCATGCTTAAAAGGACCCTCAATCCAACCCTCTTGCAATTCAGTTCGACAGCGTTGTTTTGCTAAGTGAGCAAGGAATACAGAACGTCTTGTTTCAATTTTCTTGTGTATTCGTGTGGTTTGTTTTGATTCTGCTGTGATTTGAAGTTCTGACG_-_ATGGCTAGTAGCGAAGGGAAGGCGATTGGAATCGATCTGGGAACAACCTACAGTTGCGTGGGTGTTTGGCACCACGACCGTGTGGAAATAATTCCCAATGATCAAGGTAACAGAACGACTCCTTCCTATGTTGCTTTTACTGATACCGAGCGTCTAATTGGGGACGCTGCCAAGAATCAAGTGGCCATGAATCCCCAGAACACGGTCTTTGACGCTAAAAGATTGATCGGCAGGCGCTTCAGCGATGCCCCTGTGCAAAACGACATGAAGCTCTGGCCTTTTAAAGTATTACCTGGCCCTGGGGATAAGCCTATGATTGAGGTCAGCTACAAAGGCGAGAAGAAGCAATTCTCTCCGGAAGAAATTTCGTCTATGGTCCTTTCCAAGATGAGGGAGATTGCAGAGGCTTTTCTTGGTCAGAGTGTAAAGAATGCTGTGGTTACTGTTCCTGCCTATTTCAATGACTCGCAGAGGCAGGCGACCAAGGATGCTGGTCTCATTGCTGGCTTAAATGTGTTGAGGATTATTAATGAGCCTACAGCTGCTGCCATTGCTTATGGGCTCGACAAGAAGGCCAGTTCTACTAGAGAAAAGAATGTGCTCATCTTTGATTTGGGAGGAGGAACGTTCGATGTCTCAATTCTGACTATTGAAGAGGGAATCTTCGAAGTGAAGGCCACCGCCGGAGATACTCACTTGGGAGGCGAGGATTTTGATAACAGAATGGTGAATCACTTTGTGCAGGAATTCAAAAGAAAGCACAGAAAAGACATCAGCGGGAATGCCAGAGCTCTTCGCAGGCTGAGAACAGCATGTGAGAGGGCAAAAAGAACGCTCTCTTCTACTACACAGACAACGATTGAGATTGATTCTCTATATGAAGGAATTGATTTTTACGCCACAATTACTCGAGCCCGCTTCGAGGAACTCAACATGGATCTGTTCAGGAGAAGTATGGAGCCTGTGGAGAAATGTATGCGAGATGCTAAGATGGACAAGAGCCAAATAGATGATGTTGTCTTGGTCGGGGGTTCGACTCGTATCCCGAAAGTACAACAATTGCTCCAAGATTTCTTCAATGGCAAAGAGCTTTGTAAGAGCATTAACCCAGACGAAGCCGTGGCATATGGTGCAGCTGTGCAGGCTGCCATTCTGAGCGGCGAAGGCAACGAGAAGGTGCAGGACCTGCTGTTGCTAGATGTCACTCCATTAAGTCTGGGGTTGGAAACAGCGGGAGGTGTAATGACAGTATTAATACCGAGGAACACCACCATTCCCACCAAGAAGGAGCAGATTTTCTCAACTTACTCAGATAATCAGCCTGGGGTTTTAATTCAAGTATATGAAGGTGAGCGAGCGCGGACGAAGGACAATAACCTGCTCGGCAAATTCGAGCTCACAGGAATTCCGCCGGCTCCTAGAGGTGTCCCGCAGATTAATGTCTGCTTTGACATAGATGCAAACGGCATCCTCAACGTTTCTGCTGAAGACAAGACTGCGGGAGTGAAGAACAAGATTACTATCACAAACGACAAGGGTCGGTTGAGCAAAGAAGAGATCGAGAAAATGGTGCACGATGCGGAGAAGTACAAGGCCGAGGATGAGGAGGTCAAGAAGAAGGTTGATGCCAAGAATGCCCTCGAGAACTATGCCTACAATATGCGAAACACCATCCGAGACGAGAAGTTTGCCGGTAAATTAGATCCGGCAGACAAATCCAAGATCGAGGAGGCTATTAATGGTGCCATCAGCTGGCTTGATCAGAACCAGTTGGCCGAGGTTGATGAGTTTGAAGACAAGACGAAAGAACTGGAGGGCATCTGCAATCCTATCATTGCTAAAATGTATCAGGGGGGAGCTGCTCCAATGGGAGGTGAAGATGATGATATTCCCACTGCTGGTGGTGCTGGTGCTGGTGCTGGTTCTGGTTCTGGTGGCCGAGGCCCCAAGATCGAAGAAGTAGATTAA___ATTGTTAATGTTCTTTCACTTTTTATTTTCTAGTATGTAAATTTTTCTACTATATATTTAGGTAGATCTGTAGAGATATAGGTATGTCTTAGATTGAGGGTTCAGTGGCATTTTTCTTTAAAATGCATTTCGAGAGATGTTTATGTGAAACTGCAATATTGCATTCTGAAGATAGGTGTATTGTCACCTTCTTTGTGTGTGTAAAAATGGTTGAGTTTTATAATACTGAATAATTTTTCT

Fln Alignment:

sp_v1.1_unigene18542___MASSEGKAIGIDLGTTYSCVGVWHHDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDAPVQNDMKLWPFKVLPGPGDKPMIEVSYKGEKKQFSPEEISSMVLSKMREIAEAFLGQSVKNAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDKKASSTREKNVLIFDLGGGTFDVSILTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHRKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRRSMEPVEKCMRDAKMDKSQIDDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKEEIEKMVHXXXXXXXXXXXXXXXXXXXNALENYAYNMRNTIRDEKFAGKLDPADKSKIEEAINGAISWLDQNQLAEVDEFEDKTKELEGICNPIIAKMYQGGAAPMGGEDDDIPTXXXXXXXXXXXXXXRGPKIEEVD
A9NXU2_______________MATSEGKAIGIDLGTTYSCVGVWQHDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRITDASVQSDMKLWPFKVLSGPGDKPMIEVIYKGEKKQFSPEEISSMVLIKMREIAEAFLGQTVKNAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDKKATSTKEKNVLIFDLGGGTFDVSILTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRRSMEPVEKCMRDAKMDKSQIDDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKEEIEKMVHDAEKYKAEDEEVKKKVDAKNSLENYAYNMRNTVRDEKFAGKLDPADKAKIEEAINGAISWLDQNQLAEVDEFEDKMKELEGICNPIIAKMYQGGSAPMGADDDDIPT----SGGAGAGAGGRGPKIEEVD

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
465	16			83	0.994512
614			66	33	0.997452
2081	8		91		0.999807
2082		91	8		0.999807
2154	20			80	0.995493
2155	40		40	20	1.0
2158	20		80		0.995493
2160	20			80	0.995493
2161		20	80		0.995493
2176			66	33	0.997452
2381		80	20		0.995493
2382	80		20		0.995493
2415		80		20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
2159	2180	TGGTGC TGGTGC TGGTGC TGGT	22

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain