SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18540

Length: 1751 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene18540 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ribosome biogenesis protein bop1, putative	-	-	72%
FL-Next	sp=Ribosome biogenesis protein BOP1 homolog; Chlamydomonas reinhardtii (Chlamydomonas smithii).	-	-	49%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	rRNA processing	GO:0006364	Biological Process	0.0	79%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	BOP1, N-terminal domain	IPR012953	-	0.0	79%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: A8ID74

Fln msg: Distance to subject end: 370 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 332 - 797

Fln protein: MPSKIIWEPLMFFPIFMERTLKMPKVKILLGMMMRRRRCLKELKSLILRRTRMMRGLKELKNLISRRTRMRRGLKELKSLILRRTRFLPETLLEMFPSVGIKTNSTLAVIFRVRRSRSSLKKDQLDSFLASTDDSSDWRKVYDEYNDEEVELTKDEIKFISRLRKGTIPHADVNPYEPYVDWFDWKDKGHPLSNAPEPKRRFIPSKWEAKKVVKLVRAIRKGWITFQKAEEKPRFYLMWGDDLKPSEKMANGLSYIPAPKPKLPGHEESYNPPPEYIPTQEEINSYQLMYEEDRPKFIPKRFDSLRNVPAYDRFLSEIFERCLDLYLCPRTR

Protein Length: 333

Fln nts: CCAGTAACCTAtACCTTGCAAGTGCTTTCAACTGAAGGTTGAGTGGCGATCTCGATATCTAGGAGGTTTAATATCGAGGAGATACTATGGAAATCGTTTTTATAATACTTTGTCTGTCGCCCGCGGCGGTAGATTGCGATTAAAAAGTAACCAGCGTCGTGACCTTGGCTGTCACTCAGTTGTTTTGGTTCCTTTCGAGTTAGACTACCCCTGACAATTGCTTTTACCTTTCAAGCTGCTCTCAGTATCTAATGGAGGTTTGATATTCGACGATACTTGATTTGTGCAAATACCTAGTATACATAACAAGATATTATACTCTGTTCCTCGCCCTAGATTGCGATTGAAAGCAAGCGAGACAGTCAGGGGTACGGTTGCTGCTGTTGAAGGCGCCTTGGGCTGTATAGTAACAACACTGCCACTGAAATCATTGCTGGGGCGTTGGTAAAGTTGCAGAAGCAGCAGGACGACTAACAGGATGAAGCAGAAGCGAAAGGGCCATCAAGTTGATGACCCAAAATATTCTGTCCAAACCCCCCAAGAGGATGACACACCTAACGAAAGCGGCCCTGCTTCGGAAGAAGTGGAGAGTAGTGACGAAGAAGGCGGCAATAGCAGCAACATCGAAGATGATATTATTTATTCTTCTTCCGAAGAAGACCCCGTTGTTAGTTCTGATTACGAAGAAGACGAAGACGGAGAAGGTGATGCAGAGGGTGTGACTGCAGAGCAAGAGTTGGAAGGGGACATCGACA_-_ATGCCCTCCAAAATTATATGGGAACCCTTAATGTTCTTTCCAATTTTCATGGAGAGAACCTTAAAAATGCCGAAGGTGAAGATACTTCTGGGGATGATGATGAGGAGGAGGAGATGCCTAAAAGAGCTGAAGAGTCTGATTCTCCGGAGGACGAGGATGATGAGAGGCCTAAAAGAGCTGAAGAATCTGATTTCTCGGAGGACGAGGATGAGGAGAGGCCTAAAAGAGCTGAAGAGTCTGATTCTTCGGAGGACGAGGTTCCTTCCAGAAACACTGTTGGAGATGTTCCCCTCCGTTGGTATCAAGACGAACAGCACATTGGCTGTGATATTCAGGGTAAGAAGATCAAGAAGCAGCCTAAAAAAGGACCAGCTAGATTCATTCCTCGCTAGTACAGATGATTCCAGTGACTGGCGTAAGGTATATGATGAATATAATGATGAAGAGGTTGAGCTAACAAAGGATGAAATCAAGTTTATTAGTAGATTACGTAAAGGCACAATACCTCATGCTGATGTCAATCCATATGAGCCTTATGTTGATTGGTTTGACTGGAAAGATAAGGGTCATCCCTTGTCTAATGCCCCAGAACCCAAGCGGAGATTTATCCCATCAAAATGGGAAGCTAAAAAGGTTGTGAAGCTTGTGAGAGCAATTCGGAAAGGATGGATAACGTTTCAGAAAGCTGAAGAAAAGCCTCGCTTCTATTTGATGTGGGGAGATGATCTCAAACCATCAGAAAAAATGGCAAATGGGCTGAGTTATATCCCAGCGCCAAAACCAAAGTTACCTGGGCATGAAGAATCATACAATCCTCCACCTGAGTATATTCCAACACAGGAGGAGATCAATTCATACCAGCTTATGTATGAGGAAGACCGTCCTAAATTCATCCCTAAAAGGTTCGACTCATTGAGAAATGTTCCAGCTTATGACAGATTCCTTTCCGAGATATTTGAGCGATGTTTAGACCTATACTTGTGTCCAAGAACTCGG

Fln Alignment:

sp_v1.1_unigene18540___PSVGIKTNSTLAVIFRVRRSRSSLKKDQLDSFLASTDDSSDWRKVYDEYNDEEVELTKDEIKFISRLRKGTIPHADVNPYEPYVDWF-DWKD-KGHPLSNAPEPKRRFIPSKWEAKKVVKLVRAIRKGWI--TFQKAEEK----PRFYLMWGDDLKPSE---KMANGLSYIPAPKPKLPGHEESYNPPPEYIPTQEEINSYQLMYEEDRPKFIPKRFDSLRNVPAYDRFLSEIFERCLDLYLCPRTR
A8ID74_______________PLVWYKDEEHIGYDIEGARITKAQRKDRLQQLLDRNDSKKALRTIYDPYNDEEVTLSKEELAMVMRIRAGQFPHLEVNPHETEHTWFTDPRDAEVMPIVDRPEPKSRFVPSKWEEQKIVKLVRAIRKGWIKKTPEQEEEERAAGPPAYLLWADDGLTDEAAAKAGSGLTYIPAPKLQLPGHADSYNPPAEYLPTEEEVAAWQMADPEDRPKALPQAFTSLRAVPAYTDFIKERFERCLDLYLCPRVR

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
153		66	33		0.997452
154	33			66	0.997452
156	33	66			0.997452
157			33	66	0.997452
160	33			66	0.997452
161	33		66		0.997452
162			33	66	0.997452
166	33			66	0.997452
167		33	66		0.997452
170	66	33			0.997452
171			33	66	0.997452
535		88	11		0.923564
538	11	88			0.923564
540	11			88	0.923564
667			50	50	1.0
671	50		50		1.0
673		50	50		1.0
675		50		50	1.0
682			42	57	1.0
687	42			57	1.0
688		42	57		1.0
689			42	57	1.0
690	42			57	1.0
755	85			14	0.993533
1417	28			71	1.0
1567	37	62			1.0
1588	20	60		20	0.99255
1593		40		60	1.0
1594		40	60		1.0
1595	60	40			1.0
1598		40	60		1.0
1604		40	60		1.0
1606		60	40		1.0
1608	40	60			1.0
1610	60			40	1.0
1612			60	40	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
884	895	CTC CTC CTC CTC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain