SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18537

Length: 897 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18537

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Spotted leaf protein, putative n=1 Tax=Ricinus communis RepID=B9SDI7_RICCO	-	-	5.0e-40	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	protein	-	-	0.0	61%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	61%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	61%
Blast2go	protein autoubiquitination	GO:0051865	Biological Process	61%
Blast2go	response to chitin	GO:0010200	Biological Process	61%
Blast2go	respiratory burst involved in defense response	GO:0002679	Biological Process	61%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	61%
Blast2go	cytosol	GO:0005829	Cellular Component	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXN2

Fln msg: your sequence is shorter than subject: 275 - 417

Fln protein: AGSSIVLASLINSSCCDDNENEKFRAYEETLGILHLLPMTQQTARSLSEAACIRSMALVLHKGNAEARLHAVVLLQKVSTWISDWEFIGRGKIDIFQGLLEIIKGESCHQAIMAALVVLIAICKRSRKNRLMAIEAGTVFCLIELLPEAEKPKCEKILDLLDMLVDYAEGRAAMANHAMGIAVVSKKIIRVSEVATQKAVRILWSLCTYSSTASILREVLQCGAVSKLCMLQQLSCAEKTKQKAKEVLRLHANTFRVSPCLPYLMRTVMHSFEI*

Protein Length: 276

Fln nts: CGGCCGGTTCGAGTATCGTTCTTGCATCTCTGATAAATTCGTCATGCTGCGACGACAATGAGAATGAAAAGTTCAGGGCTTATGAGGAAACTTTGGGTATATTGCATCTGCTTCCTATGACCCAGCAAACTGCAAGATCTTTGTCAGAGGCAGCGTGCATTAGGTCCATGGCCTTGGTCTTGCATAAGGGAAACGCTGAAGCTAGACTTCACGCGGTCGTTTTATTGCAGAAGGTTTCCACTTGGATATCTGATTGGGAATTTATTGGCAGGGGAAAGATTGATATTTTCCAAGGTCTCCTAGAGATCATAAAGGGTGAATCCTGCCATCAGGCGATCATGGCTGCCTTGGTTGTCCTCATAGCAATATGTAAAAGGTCCAGAAAGAACAGATTAATGGCTATAGAGGCAGGCACAGTATTTTGTCTGATTGAGTTACTTCCAGAGGCCGAGAAGCCCAAGTGTGAAAAGATATTAGATCTGTTGGACATGCTAGTGGACTATGCAGAAGGAAGGGCTGCCATGGCTAATCACGCGATGGGCATTGCTGTAGTCTCCAAGAAGATTATTAGGGTTTCAGAAGTTGCCACTCAGAAAGCAGTTCGAATTCTTTGGTCGCTTTGCACATATTCTTCAACTGCGTCGATTCTTCGGGAGGTGCTTCAGTGTGGAGCTGTGTCTAAACTTTGCATGCTTCAACAACTCAGTTGTGCAGAGAAAACGAAGCAGAAGGCGAAGGAGGTATTGAGATTGCATGCAAATACTTTTAGAGTCTCCCCTTGTCTTCCGTACCTAATGAGAACTGTCATGCACAGTTTCGAAATTTGA___TCTGATACACCCACGCAATTAAACAGAAAAATGGCCTGAAAAAAGATGGCATTTTCCTTGTTAGATCAAT

Fln Alignment:

sp_v1.1_unigene18537___AYEETLGILHLLPMTQQTARSLSEAACIRSMALVLHKGNAEARLHAVVLLQKVSTWISD--WEFIGRGKIDIFQGLLEIIKGESCHQXXXXXXXXXXXXCKRSRKNRLMAIEAGTVFCLIELLPEAEKPKCEKILDLLDMLVDYAEGRAAMANHAMGIAVVSKKIIRVSEVATQKAVRILWSLCTYSSTASILREVLQCGAVSKLCMLQQLSCAEKTKQKAKEVLRLHANTFRVSPCLP
A9NXN2_______________ACDEALGILYKLPMADETAETLSRSKTLKPISWILKKGSCNGRFYSAMLLKTVSSSGQKILQQLVVNADDDLIEGLLQLLTEEVCLQATTSSLEILMAICSPSRKNRIKAIEAGAIYILIELLPESQRMNCEKMLCLLDILCECAEGRATTIDHAMGIASISKKIFRVSQVATEKAIRILWSLCKFSPTPRLLNEMVQIGAVYKLCVLLQLECTSKTKQKAREMLRAHGKYWTISPCVP

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
542		16	83		0.994512
544		83		16	0.994512
545	83	16			0.994512
546			16	83	0.994512
549	16	83			0.994512
550		16		83	0.994512
551		16	83		0.994512
553	80			20	0.995493
555			20	80	0.995493
558		80	20		0.995493
559		80		20	0.995493
560	80	20			0.995493
563	80	20			0.995493
564	80			20	0.995493
565		20	80		0.995493
584	20		80		0.995493
624		20	80		0.995493
633		80		20	0.995493
654			60	40	1.0
712		20		80	0.995493
751	60		40		1.0
781		33		66	0.997452
802	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain