SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18535

Length: 828 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18535

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lipid-A-disaccharide synthase, putative n=1 Tax=Ricinus communis RepID=B9SSI8_RICCO	-	-	51%
FL-Next	tr=Lipid-A-disaccharide synthase, putative; Ricinus communis (Castor bean).	-	-	69%
Blast2go	lipid-a-disaccharide synthase	-	-	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	58%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	58%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 19	IPR003835	-	0.0	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SSI8

Fln msg: Separated hits, possible frame ERROR between 215 and 220, Distance to subject end: 63 aas, your sequence is shorter than subject: 276 - 469

Fln protein: HVVITIDSKGFSFRLLKQIHARCAQQQVARPLTFHYIAPSFWAWKGGEKRLKGLASIVDHMLCILPFEEExxxKTNGLSATFVGHPILEDVVNAHTGEDPKISEWQVRGDGAKFRMEHGFSPGTPIITLLPGSRLQEVDRMLPIFSCTLELLKDTFHDLSAVIPVAPNQKVVNCVRNIVGRWSNPVVLIPGESLEATYSAFDASMVALGTSGTAILQLQLARLPCVVAYRASSPN*VDYSTSDQALYISLPNILLDSEVLPEALFSECTPRRLASL

Protein Length: 277

Fln nts: CACATGTTGTTATCACAATTGACTCCAAAGGATTTTCTTTTCGTCTCTTGAAGCAGATACATGCTAGATGTGCTCAGCAGCAAGTAGCTCGCCCTTTGACTTTCCATTACATTGCACCTTCATTTTGGGCATGGAAGGGAGGTGAAAAACGGTTGAAGGGGCTAGCAAGCATAGTTGATCACATGCTGTGCATCCTTCCTTTTGAAGAAGAAATxxxxxxCAAAACGAATGGATTATCTGCGACATTTGTGGGTCATCCTATACTTGAGGATGTCGTTAATGCCCATACTGGTGAAGACCCAAAGATAAGTGAATGGCAGGTTCGAGGAGATGGTGCAAAGTTTCGAATGGAACATGGATTTTCGCCTGGCACACCTATTATCACCTTGCTTCCTGGGAGCAGACTGCAAGAGGTTGATCGCATGCTGCCTATTTTTAGCTGCACTCTGGAGCTACTAAAAGATACTTTTCATGATTTAAGTGCAGTTATTCCAGTTGCACCCAACCAGAAGGTTGTGAATTGTGTCAGAAACATCGTTGGAAGATGGAGTAATCCTGTTGTGTTGATACCTGGGGAATCTCTTGAAGCAACTTACAGTGCATTTGATGCAAGCATGGTTGCTTTAGGAACTTCTGGAACAGCAATTCTGCAATTGCAACTTGCTCGATTGCCTTGTGTTGTTGCATATCGTGCAAGTTCTCCTAACTGAGTGGATTATTCAACTTCGGACCAAGCTTTGTATATATCGCTGCCAAACaTTCTGCTGGATTCTGAGGTTCTTCCTGAAGCACTGTTCTCAGAATGCACACCTAGGCGGCTAGCTTCGCTA

Fln Alignment:

sp_v1.1_unigene18535___HVVITIDSKGFSFRLLKQIHARCAQQQVARPLTFHYIAPSFWAWKGGEKRLKGLASIVDHMLCILPFEEEIxxKTNGLSATFVGHPILEDVVNAHTGEDPKISEWQVRGDGAKFRMEHGFSPGTPIITLLPGSRLQEVDRMLPIFSCTLELLKDTFHDLSAVIPVAPNQKVVNCVRNIVGRWSNPVVLIPGESLEATYSAFDASMVALGTSGTAILQLQLARLPCVVAYRASSPN*VDYSTSDQALYISLPNILLDSEVLPEALFSECTPRRLASL
B9SSI8_______________HVVVTVDSKGFSFRLLKQLRARYSQQRLNSPVHFHYVAPSFWAWKGGEERLKNLANFVDHVFCILPNEEAVxxRLNGLTATFVGHPVLEDLLEFNLGKQNSAHEWKMERNSEDFRSKHAVPSGATVISLLPGSRLQEVTRMLSIYANTMEQLKSSTHELTAVIHVAPNLHVENYIRDSVRKWPVPSILIPGAIRHMKYDALSASSIALCTSGTVALELQLARLPCVVAYRAHLLTEWIIRYKAKIPYISLPNILMDSAIIPEALFQACTPRNLASL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
467	20			80	0.995493
469		80	20		0.995493
470	80		20		0.995493
471			20	80	0.995493
611		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain