SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18528

Length: 1604 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18528

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MAP3K-like protein kinase [Arabidopsis thaliana] emb\|CAB80361.1\| MAP3K-like protein kinase [Arabidopsis thaliana]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	protein	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on ester bonds, Phosphoric diester hydrolases.	EC:3.1.4.-	-	0.0	74%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Ether lipid metabolism	00565		0.0	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	phosphoric diester hydrolase activity	GO:0008081	Molecular Function	0.0	74%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAN6

Fln msg: your sequence is longer than subject: 421 - 389

Fln protein: MANLGIVLFMAAIVLLPASGAGAACSSGSCQVHDICTKDSDCVAGLQCISCSSVGDMSYRCTRTKTTDPSLQVGGLPFNKYSWLTTHNSYAIIGEKSYTGVQRITFNNQEVSVTDQLNNGTRGLMLDMYDFENDVWLCHSFGGNCYNFTAFMPAVNTLKEIQAFLAANPSEIVTIFIEDYVKATKGLTKVFTAAGLMKYWYPVSAMPKNGSDWPTVSDMVAKNYRLIVFTSIASKEASEGIAYQWNYVVENQYGDAGLVAGNCTNRAESKNLSSKAQSLVLENFFPDQPSVPKACVDNSDQLLNILSVRHQAAGNRWANFLAVDFFQRSYGGGAFQAVDKLNGELICGCSDISQCKANSTYGVCPKSSSSTETNTNGSPVSTSPATSAAVSTEFNNPTIKLLLRLSATIVLIILIFLEEV*

Protein Length: 422

Fln nts: ATCAACCTTTCATGAATTGTGTCCTGGGCTCGGGCTGTCAATCCCACAATCTGAAAGGGATTTTCAAACAAATTATTTCTGCGACAAAAAATCATTGAGGGAAGCGCGCTTCC_-_ATGGCCAATCTGGGCATCGTCTTGTTCATGGCCGCAATTGTGCTCTTGCCCGCGAGTGGTGCAGGAGCAGCTTGTTCTAGTGGGAGTTGCCAGGTCCATGATATTTGTACAAAGGACAGTGACTGTGTCGCGGGTCTTCAATGCATATCGTGTAGTTCAGTGGGCGACATGAGTTACAGATGCACCAGGACTAAAACTACAGATCCATCTTTACAGGTGGGCGGCCTGCCTTTCAATAAATACTCATGGCTGACGACCCACAATTCTTATGCAATCATCGGAGAAAAATCGTACACGGGTGTCCAAAGAATCACTTTCAATAACCAAGAAGTTAGCGTTACGGATCAGCTTAATAATGGTACTAGAGGGCTAATGTTGGACATGTATGATTTCGAGAATGATGTTTGGCTCTGTCATTCCTTCGGAGGCAATTGCTACAATTTCACAGCTTTTATGCCAGCTGTGAATACATTGAAGGAGATTCAGGCATTTCTGGCTGCCAATCCCTCTGAAATCGTCACCATATTCATCGAGGACTATGTCAAAGCTACCAAAGGTTTGACCAAAGTCTTCACCGCAGCCGGATTGATGAAGTACTGGTACCCAGTCTCTGCCATGCCCAAAAATGGCAGCGATTGGCCCACTGTGAGCGACATGGTCGCGAAAAACTATCGCCTTATAGTATTCACCTCAATAGCCTCCAAAGAGGCCTCAGAGGGAATTGCTTACCAGTGGAACTACGTGGTGGAAAATCAATATGGGGACGCTGGTTTGGTGGCAGGAAATTGCACTAATCGCGCTGAATCGAAGAATTTAAGCTCAAAAGCCCAGTCGCTGGTTCTCGAGAATTTCTTCCCAGATCAGCCCAGTGTACCCAAAGCCTGCGTAGATAATTCCGATCAGCTCTTAAATATTCTGAGCGTGCGCCACCAGGCTGCAGGAAACCGATGGGCTAATTTCTTGGCAGTGGACTTCTTTCAGAGAAGCTATGGGGGAGGTGCATTCCAAGCTGTAGATAAACTGAACGGAGAACTGATTTGCGGATGCAGTGACATTAGTCAGTGCAAGGCAAACTCAACCTACGGAGTATGCCCAAAATCCAGCTCCAGCACTGAAACAAATACAAATGGTTCGCCTGTAAGTACATCACCTGCAACCTCTGCCGCTGTTTCTACCGAATTTAACAATCCGACCATAAAGCTCCTTCTACGGCTTTCAGCAACAATTGTTCTCATTATTTTAATCTTTCTGGAAGAGGTTTAG___AGTCCGAATCCCAGTTTTGAGTATGCCATGTAAAGCCCAACATTGATTTGTACGGCGTTCCATGCAAATAGTAAAATTTTTAGGAAATTTCTGATATGGCTTCTTGTTTAATTCCTCGTGCATCTATTTGTTCGAGGTGCCCTTCATTTTTTAAATACGTCAGTCCCAAATCAGTGCAATTTAACTGTTCAAAGGTTTTTATTAATGAATTTACTCTTCAGGTTTTCA

Fln Alignment:

sp_v1.1_unigene18528___QVHDICTKDSDCVAGLQCISCSSVGDMSYRCTRTKTTDPSLQVGGLPFNKYSWLTTHNSYAIIGEKSYTGVQRITFNNQEVSVTDQLNNGTRGLMLDMYDFENDVWLCHSFGGNCYNFTAFMPAVNTLKEIQAFLAANPSEIVTIFIEDYVKATKGLTKVFTAAGLMKYWYPVSAMPKNGSDWPTVSDMVAKNYRLIVFTSIASKEASEGIAYQWNYVVENQYGDAGLVAGNCTNRAESKNLSSKAQSLVLENFFPDQPSVPKACVDNSDQLLNILSVRHQAAGNRWANFLAVDFFQRSYGGGAFQAVDKLNGELICGCSDISQCKANSTY
D5AAN6_______________QLLDSCYTEGDCGSGLYCSTCQAVGQNQPVCVRGQATIVTSIVNGLPFNKYTWLTTHNAFSIIGEQSYTGTARVTFYNQEDSVTNQLNNGVRGLMLDMYDFMGDVWLCHSLQGQCYNFTAFEPAINTLREVEAFLSLNPTEIVTIFIEDYVHAIKGLTKVFTDAGLSKYWFPVSKMPMNGEDWPTVTEMVANNQRLVVFTSMPSKEATEGIAYQWRYITENEPGDGGIKPGSCSNRKESVPLNSKAAILFLMNYFPTIPDQSGTCKDHSTSLIQMLNVCYHGAG-KAPNFIAVNFYMRSDGGGVFDAVDRVNGRSLCGCNTVAACQVLNSF

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
7	33	66			0.997452
10			33	66	0.997452
11			33	66	0.997452
12		66	33		0.997452
1231		25		75	1.0
1328		73		26	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain