SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18521

Length: 1691 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18521

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ring finger protein, putative	-	-	6.0e-35	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	ring finger	-	-	5.35296e-43	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	5.35296e-43	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	5.35296e-43	60%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	5.35296e-43	60%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	5.35296e-43	60%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXH2

Fln msg: atg_distance in limit (1-15): atg_distance = 3, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 376 - 413

Fln protein: MDPPWIPQSNMLPPPTPQHAQQSNPNFSPLVIALIGILAGAFLLVSYYTIIAKYCTKWDAFRQRTREDHENNDPFHRQGPPGEWPILTRGLDESVINSLPAFKYTRGDGLVHDNECAVCLSEFQDDENLRLLPKCTHAFHLPCIDMWLSTHSNCPLCRANIVALVPTPVEGVEIPSEEVSESTVDSPLQNPHENESGESSLHEESGQGMAIEAPTEMATSHIRAQSDLVRKHGRNDSTSQCKELFMSAEMPQLPMRRSFSVDSSFSISVTDLHRSLEDGRLKHFPNENEGGVGVSCSGHLGNGGSEALYSVDEAGAGASSSVLPFKTAEENNLKVFSKQLDGDKNKFSMKRSFSGGGRFFFLRNGRGRNTSILPT*

Protein Length: 377

Fln nts: GAAACACTGAGCAGGATGGCATGCGGGCTTTACAAATGAATGTCTAGAGTCGACTCCCTGAAAGAGGATAAAATCCCAG_-_ATGGATCCTCCCTGGATTCCACAGTCCAATATGTTGCCCCCCCCAACACCTCAACACGCACAGCAATCAAATCCCAATTTTTCTCCTCTGGTTATAGCCCTGATAGGCATCCTGGCCGGCGCCTTCTTGCTAGTTAGTTACTACACCATAATAGCCAAATACTGCACAAAGTGGGATGCATTCAGACAGAGAACCCGGGAGGATCATGAAAATAATGACCCATTTCATCGCCAAGGTCCTCCAGGTGAATGGCCCATTCTTACTCGTGGGCTTGATGAATCTGTCATCAATTCTCTCCCAGCTTTCAAATACACAAGAGGTGATGGCCTGGTACACGATAATGAATGCGCAGTTTGCCTGAGTGAATTTCAAGATGACGAGAATCTCAGGCTTCTTCCCAAATGCACACATGCTTTTCATCTGCCCTGCATTGATATGTGGCTCAGTACCCATTCAAACTGCCCTCTCTGCCGTGCCAATATTGTAGCCTTGGTTCCTACCCCTGTGGAAGGAGTAGAGATTCCGTCTGAAGAAGTTTCTGAATCCACTGTCGATTCTCCATTGCAAAACCCACATGAAAACGAATCTGGAGAGAGCTCTTTACACGAAGAATCAGGGCAAGGGATGGCCATTGAAGCTCCGACTGAAATGGCCACATCGCATATCCGAGCACAGAGTGACTTGGTCAGGAAGCATGGGAGAAATGACAGCACATCTCAGTGCAAAGAGCTTTTTATGTCTGCAGAGATGCCACAGCTCCCCATGAGGAGATCTTTTTCAGTGGATTCAAGTTTCTCAATATCTGTCACTGATCTTCATAGGAGCTTGGAAGATGGAAGATTGAAGCATTTCCCTAATGAGAATGAAGGCGGGGTTGGAGTTTCATGCAGTGGCCATCTTGGGAATGGGGGATCTGAGGCCCTTTACAGTGTGGATGAAGCAGGAGCTGGAGCCTCATCAAGTGTGCTGCCTTTCAAAACTGCTGAAGAAAATAACTTGAAGGTCTTCAGCAAGCAATTGGACGGTGATAAGAATAAATTCTCCATGAAAAGATCTTTCTCTGGGGGCGGCAGGTTCTTTTTCCTCAGAAATGGCAGAGGTAGGAATACTTCCATCCTTCCGACATGAAGAAAGCTTGTTATCCATTCTGCAAGCTGGGGTTTGCAGATCCATATTACTCTTTTAGAGGTACGATTCAGTATACTTGAATTGGTTTTTTAATTCACTCTGTCTCTTTAGGTTGCTCTGAACTTTAGACTACTGGGAGGCTAGATATCTCTCCATTACTCAAAAGCCCTAGAAAATGAGTAACTATGATGATCAGAGAAGGATATCAATTGTGCTGATGTTATCTTTCTCTCAAAACACATCGCAGCTCTTTGCTCAAATATCTACTTCATGCTTTTACTTTTTGGGAGATTTGGTGTTTCTCTTAGTTACAGCAATTTGAATGACTTGCTCATGCCTGATCTTCTCCCCTAGAAGCATTTGTATCAAGCCCTTCTGTACGGGGCTTTATTTGGCATTCTGCATTTATTGTTTGTTCGGCTTAGTATTGTACTGTAATGTATATCCAGACTGCCTTTATACAATGGATTTTGCATTGGATGAA

Fln Alignment:

sp_v1.1_unigene18521___PPPTPQHAQQSNPNFSPXXXXXXXXXXXXXXXXSYYTIIAKYCTKWDAFRQRTREDHENN---DPFHRQGPPGE-WPILTRGLDESVINSLPAFKYTRGDGLVHDNECAVCLSEFQDDENLRLLPKCTHAFHLPCIDMWLSTHSNCPLCRANIVA-LVPTPVEGVEIPSEEVSEST------------------VDSPLQNPXXXXXXXXXXXXXXXQGMAIEAPTEMA----TSHIRAQSDLVRKHGRND
A9NXH2_______________PPPFELGNRDSDPTFSPLVIAIIGILASAFLLVFYYAILAKYCTSWDSFRSRMRGGGYNDSYEDEDHNLTPSNDSWPLVTVGLEESTIRSIPVYKYKRGDGLVDCTDCSVCLSEFHEDDSVRLLPKCNHAFHVPCIDTWLNSHSNCPLCRANIVSPAASLPVEAAITIHDEGSDTTAVAQTPNDNHEQNLREEPMSSSLGNSSRANETNPNTFMEREDAEKIEQETQMVELMMPSDVRALSDLASKHRRDD

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1105		75		25	1.0
1111		25		75	1.0
1293		10		90	0.90298
1581	10		90		0.90298
1668	40			60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain