SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18485

Length: 1248 nt

Origin of reads: Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18485

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG5210 GTPase-activating protein	-	-	9.0e-26	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	protein	-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	regulation of Rab GTPase activity	GO:0032313	Biological Process	82%
Blast2go	Rab GTPase activator activity	GO:0005097	Molecular Function	82%
Blast2go	intracellular	GO:0005622	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Rab-GTPase-TBC domain	IPR000195	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ90

Fln msg: Separated hits, possible frame ERROR between 541 and 543,

Fln protein: MKNEEDAFWMLAVLLENVLFNDCYADNLSGCHVEQRVFKDFLAKMCPSIATHLENINFDVSIVATEWFLCLFAKSLPSETAMRIWDILFNEGANILFRVALAIFKIxxEDQLLAANHVGDIIRILRHTTHHAFDPDALLKVAFEKIGSMTTNSITKHCQKQQAAVMAELEQRTRRLNSLERDQPRPR*

Protein Length: 189

Fln nts: CTACTATCAAGATCTCATTCAGGCAGTTGAAGGCATGGTaACACCTGCTACTCTCCAGATTGATCAAGATCTTGCCCGTACTTTTCCAACCCACCCCTGGTTGGATACTGAAGAGGGACACGCTTCTCTGCGAAGAGTGCTTGTTGCTTACTCTTTTCCGGAGTCACCTGGGCGGTAACGCAAAGGGCTAAATTATGTTGCTGCATTGTTATTGTTAGTC_-_ATGAAAAATGAAGAGGATGCGTTTTGGATGCTGGCTGTACTTTTGGAGAATGTGTTGTTTAATGACTGCTATGCAGACAATTTGTCTGGATGCCATGTTGAACAAAGGGTATTTAAGGATTTCCTTGCAAAAATGTGCCCTAGTATCGCAACACACTTGGAGAATATAAATTTTGATGTCTCTATTGTGGCAACAGAATGGTTTCTCTGTCTGTTTGCAAAGAGCTTGCCATCCGAAACAGCGATGCGCATTTGGGATATCCTTTTCAATGAGGGTGCCAATATTTTATTTAGGGTTGCCTTAGCTATATTCAAGATAAAxxxTGAGGACCAGCTGCTGGCTGCCAACCATGTTGGGGATATTATTAGAATTTTGCGTCATACTACACATCATGCATTTGACCCAGATGCACTGTTGAAGGTAGCATTTGAGAAGATTGGTTCTATGACCACAAATTCTATCACAAAGCATTGTCAAAAGCAACAGGCTGCAGTCATGGCAGAGTTGGAGCAGAGAACAAGGCGACTTAACTCATTGGAAAGGGATCAGCCACGACCACGTTAA___AATAAATGTATTTAACGAATATGTACATATATACATTTTTCTGGGTGTCTGCAAGGCATGATAATTGATGCATCCTATCCTCGAAGAGGCATTATAAATCATATTGTAGTATTTGGTCAAACATAAAGGCATGCCCTTTCATATTTTCCTCTGCATGATAAATGATGCATCCCATCCTCGAAGAGACATTATAAATCATATTGTAGTATTGGTCAAACGTAAAGCATGCCCTTTCAGATTTTCTACTTCTTGTAGCCTTCTGCCGAAGGCTACCAAGAGGGAAAATCAGCTTTTTATCTCATGTAAATTTACTTCAAAGTTCTGGGGGCGAAGCTGACTTGAGTCTGGCCATCACACTCAGAGATAGTATTGAAACAAGGTTGAGAAAGGAAAGTGTAGACTAAGTTTATTGTATTGGCTTTGCTCTGAGCATTGCGTGCACATGTGAATAAATAGTATATTGACG

Fln Alignment:

sp_v1.1_unigene18485___MKNEEDAFWMLAVLLENVLFNDCYADNLSGCHVEQRVFKDFLAKMCPSIATHLENINFDVSIVATEWFLCLFAKSLPSETAMRIWDILFNEGANILFRVALAIFKIKxEDQLLAANHVGDIIRILRHTTHHAFDPDALLKVAFEKIGSMTTNSITKHCQKQQAAVMAELEQRTRRLNSLERDQ
A9NZ90_______________MKTEEDAFWMLAVLLENVLVSDCYTHNLSGCHVEQRVFRDLLAKKLPRIAAHLEHLEFDVSLVATEWFLCLFAKSLPSETTMRVWDVLFNEGAKVLFRVALAIFKMKxEDELLAAQNIGDVINILHNTTHHAFDPDELLKVAFEKIGSMTTNTITKQRKKQEPAVMAELDKRSRRLESMGSDK

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
155		25		75	0.996473
156			25	75	0.996473
163		25		75	0.996473
164		25		75	0.996473
165		75		25	0.996473
167		75	25		0.996473
172		25		75	0.996473
173	25		75		0.996473
174		25	75		0.996473
175			75	25	0.996473
834	11		88		0.923564
835		88		11	0.923564
836	88		11		0.923564
837	88		11		0.923564
854		62		37	1.0
1248		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain