SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18484

Length: 1261 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18484

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cinnamoyl-CoA reductase, putative n=1 Tax=Ricinus communis RepID=B9SKV5_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	cinnamoyl- reductase	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cinnamoyl-CoA reductase.	EC:1.2.1.44	-	0.0	77%

Source	KEGGs	Term	Identity
Blast2go	Phenylpropanoid biosynthesis	00940	77%
Blast2go	Biosynthesis of phenylpropanoids	01061	77%
Blast2go	Metabolic pathways	01100	77%
Blast2go	Biosynthesis of secondary metabolites	01110	77%

Source	GOs	Term	Type	Identity
Blast2go	lignin biosynthetic process	GO:0009809	Biological Process	77%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	77%
Blast2go	cinnamoyl-CoA reductase activity	GO:0016621	Molecular Function	77%
Blast2go	coenzyme binding	GO:0050662	Molecular Function	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	77%
Blast2go	NAD(P)-binding domain	IPR016040	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PS01

Fln msg:

Fln protein: MGETVCVTGASGFIGSWVVRLLLEGGYTVHATVQDLGNWKETKHLEAMEGAKERLKLFKMDLMDYSSIQDAIDGCAGVFHLAMPNTIDAVADPQKQLLDPGIKGTINVLEAAHKAKVRRVVLTSSISAIIPNPKWPAGKPLDENCWTDLDYCRENGIWYTVAKTLAEKAAWEFSKEKGLDIVAINPGTALGPILPPDMNASMAMIVKLLQGNNEEYRNFFMGCAHVKDIAKAQILLYETPSASGRHLCVETIAHWSDFAELTAKLYPEYNVHKFTSVTQPGLVRVGNPPKKLSNLGLQFTSMEVIIKDCVSTLREKGLLV*

Protein Length: 322

Fln nts: ACGTAGGTTTAGATTCCAATGTGTGCAGCAGCGAAGGTTATTTTTAGCTTCATGGAAGTTAAAACTCCATTCCTTACTGAAACGGGGGAACTCCTGATAAGAGGTCTGATCTGCTCTGAAA_-_ATGGGGGAAACGGTGTGTGTAACGGGAGCTAGTGGATTCATTGGATCGTGGGTCGTTCGTTTGTTGTTGGAAGGTGGTTATACTGTGCATGCCACCGTTCAAGATCTTGGAAACTGGAAGGAGACTAAGCATCTAGAGGCAATGGAAGGAGCAAAAGAGAGGCTGAAGTTATTTAAAATGGATTTGATGGATTACTCGTCTATCCAAGATGCCATTGATGGCTGTGCTGGTGTTTTTCATTTAGCCATGCCCAATACTATTGACGCAGTTGCAGATCCCCAAAAGCAACTGCTGGATCCAGGCATTAAGGGCACAATAAACGTGCTGGAAGCAGCTCACAAAGCCAAAGTGAGGCGTGTGGTGTTGACCTCTTCGATTTCTGCTATAATTCCAAACCCCAAATGGCCTGCAGGCAAGCCTTTGGATGAGAACTGCTGGACAGATCTAGATTACTGCAGAGAGAATGGAATTTGGTATACAGTTGCAAAAACATTGGCTGAAAAGGCAGCTTGGGAATTTTCCAAGGAGAAGGGTTTGGATATAGTTGCCATAAATCCGGGGACTGCCTTGGGGCCGATCTTGCCACCTGATATGAATGCCAGCATGGCCATGATCGTCAAACTCCTTCAAGGGAACAATGAAGAATATCGAAATTTTTTTATGGGTTGTGCACATGTAAAGGATATTGCGAAAGCCCAAATACTACTATATGAAACGCCTTCAGCCTCTGGGAGGCACCTTTGTGTTGAGACTATAGCCCATTGGAGCGATTTCGCTGAGTTGACTGCAAAACTATATCCAGAATATAATGTGCACAAGTTTACAAGTGTCACACAACCAGGCTTGGTACGTGTTGGGAATCCACCAAAAAAATTATCTAACCTTGGGCTTCAATTCACATCGATGGAAGTGATAATTAAAGATTGTGTTTCCACACTGCGTGAGAAAGGCCTTTTGGTTTAG___TGAGCATAGAATAGGCAAATGTTTTCCTAGATTATTTTCAGTATAGAACTTTGTTTATGCCTACTAAACATTTTTGGTAAGTTTTAAGCTATAAAAATTACATGATATCATCTAATGATTGATGAGTTCTTTAAATAATTATTTGGAAAAAAAATTACTTTTTATATTATTATTGCC

Fln Alignment:

sp_v1.1_unigene18484___MGETVCVTGASGFIGSWVVRLLLEGGYTVHATVQDLGNWKETKHLEAMEGAKERLKLFKMDLMDYSSIQDAIDGCAGVFHLAMPNTIDAVADPQKQLLDPGIKGTINVLEAAHKAKVRRVVLTSSISAIIPNPKWPAGKPLDENCWTDLDYCRENGIWYTVAKTLAEKAAWEFSKEKGLDIVAINPGTALGPILPPDMNASMAMIVKLLQGNNEEYRNFFMGCAHVKDIAKAQILLYETPSASGRHLCVETIAHWSDFAELTAKLYPEYNVHKFTSVTQPGLVRVGNPPKKLSNLGLQFTSMEVIIKDCVSTLREKGLL
C0PS01_______________MGEVVCVTGASGFIGSWVVRLLLERGYSVHATIQDLGNWKETKHLEAMEGAKERLKLFKMDLMDYQSIQDAIDGCSGVFHLAMPNTIDAVEDPQKQLLDPGIKGTINVLEAAHKAKVKRVVLTSSVSAIIPNPKWPAGKPLDENCWTDLDYCRENGIWYTVAKTLAEKAAWDFSKEKGLNVVAINPGTALGPILPPDMNASLAMIVKLLQGNKEEYRNFFMGCAHVKDIAKAQILLYETPSASGRHLCVESIAHWSDFAELTAKLYPEYNVHKFTGVTQPGLVRVKNASKKLIDLGLQFTSMEEIIKDCVSTLREKGFL

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
626	2		97		0.944212
1088	37		62		1.0
1111		62	37		1.0
1125	38		61		1.0
1193	4	96			0.99411
1197		20	2	76	1.0
1201	7		92		0.999602
1204	7			92	0.999602
1223	11			88	0.923564
1224	11			88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain